Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30615
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32856| Best HMM Match : rve (HMM E-Value=0.11)                      31   0.95 
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_13563| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     27   8.8  
SB_50727| Best HMM Match : adh_short (HMM E-Value=8.9e-08)             27   8.8  
SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)                    27   8.8  

>SB_32856| Best HMM Match : rve (HMM E-Value=0.11)
          Length = 323

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 555 PSNSPDLSQIESLWWKMKKVLRKY-PSRSKSDL 460
           P  SPDL  IE +W ++K+ LR +   R+K +L
Sbjct: 249 PPESPDLKPIEKVWHEIKQYLRAHVKPRTKEEL 281


>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 546 SPDLSQIESLWWKMKKVLRKYPSRSKSDLRLNSWLSGSPLNL 421
           SPD+    ++W+  +  L K   R K+    N+WL  S + +
Sbjct: 112 SPDIINFNNMWYSNQTFLDKVKMRLKNKNLSNNWLHPSKITV 153


>SB_13563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 454 KLLAVWESIKPEECAALV 401
           K LA+W S KPEEC  L+
Sbjct: 76  KALALWRSGKPEECKLLM 93


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 585  LAKSISTIEXPSNSPDLSQIESLWWKMKKVL 493
            LA+++S I   S SPDLS ++S W   K+ L
Sbjct: 2623 LAQALSPISGAS-SPDLSALQSAWASEKRAL 2652


>SB_50727| Best HMM Match : adh_short (HMM E-Value=8.9e-08)
          Length = 272

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 432 DSQTAKSLALGRSSILMDIYEELFSFSTIGIRSVTSPGC 548
           +++  K++ LGR   L DI E +   +  G R +   GC
Sbjct: 207 EAEILKNVPLGRQGELADITEAVLYLAQAGARPIRHSGC 245


>SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)
          Length = 865

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 534 SQIESLWWKMKKVLRKYPSRSKSDLRLNSWLSG 436
           + +E   W+++ ++R+YPSR K  +    +  G
Sbjct: 787 THLEEELWELQDIIRRYPSRKKGFMYQREYFIG 819


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,610,950
Number of Sequences: 59808
Number of extensions: 269842
Number of successful extensions: 639
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)