Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30615
(603 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical pr... 38 0.007
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 38 0.007
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 38 0.007
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 38 0.007
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 36 0.017
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 35 0.051
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 35 0.051
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 35 0.051
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 35 0.051
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 35 0.051
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 35 0.051
AF078783-5|AAC26922.1| 236|Caenorhabditis elegans Hypothetical ... 28 4.5
Z75545-5|CAA99883.3| 836|Caenorhabditis elegans Hypothetical pr... 27 7.8
AF318607-1|AAK01095.1| 398|Caenorhabditis elegans ionotropic gl... 27 7.8
>U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical
protein K10B3.2 protein.
Length = 141
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Frame = -1
Query: 603 TTKTWLLAKSISTIEXPSNSPDLSQIESLWWKMKKVL----RKYPS-RSKSDLRLNSWLS 439
+T+ + K I+ ++ P+ SPDL+ IE+LW + +++ + YP+ S L++W S
Sbjct: 52 STRDYFKLKKINLLDWPARSPDLNPIENLWGILVRIVYAQNKTYPTVASLKQGILDAWKS 111
Query: 438 GSPLNLRSVQRWWQPCLF 385
L+S+ R + LF
Sbjct: 112 IPDNQLKSLVRSMEDRLF 129
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Frame = -1
Query: 603 TTKTWLLAKSISTIEXPSNSPDLSQIESLWWKMKKVL----RKYPS-RSKSDLRLNSWLS 439
+T+ + K I+ ++ P+ SPDL+ IE+LW + +++ + YP+ S L++W S
Sbjct: 240 STRDYFKLKKINLLDWPARSPDLNPIENLWGILVRIVYAQNKTYPTVASLKQGILDAWKS 299
Query: 438 GSPLNLRSVQRWWQPCLF 385
L+S+ R + LF
Sbjct: 300 IPDNQLKSLVRSMEDRLF 317
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Frame = -1
Query: 603 TTKTWLLAKSISTIEXPSNSPDLSQIESLWWKMKKVL----RKYPS-RSKSDLRLNSWLS 439
+T+ + K I+ ++ P+ SPDL+ IE+LW + +++ + YP+ S L++W S
Sbjct: 240 STRDYFKLKKINLLDWPARSPDLNPIENLWGILVRIVYAQNKTYPTVASLKQGILDAWKS 299
Query: 438 GSPLNLRSVQRWWQPCLF 385
L+S+ R + LF
Sbjct: 300 IPDNQLKSLVRSMEDRLF 317
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Frame = -1
Query: 603 TTKTWLLAKSISTIEXPSNSPDLSQIESLWWKMKKVL----RKYPS-RSKSDLRLNSWLS 439
+T+ + K I+ ++ P+ SPDL+ IE+LW + +++ + YP+ S L++W S
Sbjct: 370 STRDYFKLKKINLLDWPARSPDLNPIENLWGILVRIVYAQNKTYPTVASLKQGILDAWKS 429
Query: 438 GSPLNLRSVQRWWQPCLF 385
L+S+ R + LF
Sbjct: 430 IPDNQLKSLVRSMEDRLF 447
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = -1
Query: 597 KTWLLAKSISTIEXPSNSPDLSQIESLWWKMKKVLRKYPSRSKSDLRLN 451
++W + + ++ PS SPDL+ IE LW K+++ L + S +D + N
Sbjct: 258 RSWFQRRHVHLLDWPSQSPDLNPIEHLWEKLERRLGGIRA-SNADAKFN 305
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 439 WESIKPEECAALVATMPLRIKAVIESKGDTTKW 341
W++I L+ +MP R +AVI++ G TK+
Sbjct: 311 WKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY 343
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -1
Query: 597 KTWLLAKSISTIEXPSNSPDLSQIESLWWKMKKVLRKYPSRSKSDLRLN 451
++W + + ++ PS SPDL+ IE LW ++++ L + S +D + N
Sbjct: 188 RSWFQRRHVHLLDWPSQSPDLNPIEHLWEELERRLGGIRA-SNADAKFN 235
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 439 WESIKPEECAALVATMPLRIKAVIESKGDTTKW 341
W++I L+ +MP R +AVI++ G TK+
Sbjct: 241 WKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY 273
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -1
Query: 597 KTWLLAKSISTIEXPSNSPDLSQIESLWWKMKKVLRKYPSRSKSDLRLN 451
++W + + ++ PS SPDL+ IE LW ++++ L + S +D + N
Sbjct: 229 RSWFQRRRVHLLDWPSQSPDLNPIEHLWEELERRLGGIRA-SNADAKFN 276
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -1
Query: 597 KTWLLAKSISTIEXPSNSPDLSQIESLWWKMKKVLRKYPSRSKSDLRLN 451
++W + + ++ PS SPDL+ IE LW ++++ L + S +D + N
Sbjct: 258 RSWFQRRRVHLLDWPSQSPDLNPIEHLWEELERRLGGIRA-SNADAKFN 305
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 439 WESIKPEECAALVATMPLRIKAVIESKGDTTKW 341
W++I L+ +MP R +AVI++ G TK+
Sbjct: 311 WKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY 343
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -1
Query: 597 KTWLLAKSISTIEXPSNSPDLSQIESLWWKMKKVLRKYPSRSKSDLRLN 451
++W + + ++ PS SPDL+ IE LW ++++ L + S +D + N
Sbjct: 188 RSWFQRRRVHLLDWPSQSPDLNPIEHLWEELERRLGGIRA-SNADAKFN 235
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 439 WESIKPEECAALVATMPLRIKAVIESKGDTTKW 341
W++I L+ +MP R +AVI++ G TK+
Sbjct: 241 WKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY 273
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -1
Query: 597 KTWLLAKSISTIEXPSNSPDLSQIESLWWKMKKVLRKYPSRSKSDLRLN 451
++W + + ++ PS SPDL+ IE LW ++++ L + S +D + N
Sbjct: 188 RSWFQRRRVHLLDWPSQSPDLNPIEHLWEELERRLGGIRA-SNADAKFN 235
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 439 WESIKPEECAALVATMPLRIKAVIESKGDTTKW 341
W++I L+ +MP R +AVI++ G TK+
Sbjct: 241 WKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY 273
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -1
Query: 597 KTWLLAKSISTIEXPSNSPDLSQIESLWWKMKKVLRKYPSRSKSDLRLN 451
++W + + ++ PS SPDL+ IE LW ++++ L + S +D + N
Sbjct: 258 RSWFQRRHVHLLDWPSQSPDLNPIEHLWEELERRLGGIRA-SNADAKFN 305
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 439 WESIKPEECAALVATMPLRIKAVIESKGDTTKW 341
W++I L+ +MP R +AVI++ G TK+
Sbjct: 311 WKAIPMSVIHKLIDSMPRRCQAVIDANGYATKY 343
>AF078783-5|AAC26922.1| 236|Caenorhabditis elegans Hypothetical
protein H10E21.4 protein.
Length = 236
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = +2
Query: 344 LSCVAFALNDSF------NTKRHGCHQRCTLLRFNGLPDSQEFSLRSLFDLDGYLRRTFF 505
+ FA NDSF N + + T +R G PD QE+ R D +G+L + F
Sbjct: 12 IGATVFAQNDSFDLVDANNDGKLSEKELITFMRKRGRPDGQEYFQRFDLDRNGHLDISEF 71
Query: 506 I 508
+
Sbjct: 72 V 72
>Z75545-5|CAA99883.3| 836|Caenorhabditis elegans Hypothetical
protein K10D3.1 protein.
Length = 836
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 540 DLSQIESLWWKMKKVLRKYPSRSKSD 463
+L++++ WWK K V+ + P R D
Sbjct: 751 ELTELKEKWWKDKSVVCEQPKRKDQD 776
>AF318607-1|AAK01095.1| 398|Caenorhabditis elegans ionotropic
glutamate receptor GLR-3 protein.
Length = 398
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 540 DLSQIESLWWKMKKVLRKYPSRSKSD 463
+L++++ WWK K V+ + P R D
Sbjct: 347 ELTELKEKWWKDKSVVCEQPKRKDQD 372
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,868,108
Number of Sequences: 27780
Number of extensions: 214753
Number of successful extensions: 520
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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