Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30615
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10670.2 68414.m01213 expressed protein                             36   0.027
At1g10670.1 68414.m01212 expressed protein                             36   0.027
At1g49840.1 68414.m05588 expressed protein contains Pfam profile...    28   4.1  
At3g42800.1 68416.m04480 expressed protein hypothetical proteins...    28   5.5  
At1g60810.1 68414.m06845 ATP citrate-lyase -related similar to A...    28   5.5  
At1g09430.1 68414.m01055 ATP-citrate synthase (ATP-citrate (pro-...    28   5.5  

>At1g10670.2 68414.m01213 expressed protein
          Length = 423

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = -3

Query: 460 KAKLLAVWESIKPEECAALVATMPLRIKAVIE 365
           K   L    S+ PE CA LVAT+PL IKA IE
Sbjct: 148 KTIFLPTGASLTPEICAPLVATLPLEIKAEIE 179


>At1g10670.1 68414.m01212 expressed protein
          Length = 423

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = -3

Query: 460 KAKLLAVWESIKPEECAALVATMPLRIKAVIE 365
           K   L    S+ PE CA LVAT+PL IKA IE
Sbjct: 148 KTIFLPTGASLTPEICAPLVATLPLEIKAEIE 179


>At1g49840.1 68414.m05588 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 494

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -1

Query: 528 IESLWWKMKKVLRKYPSRSKSDLRLNSWLSGSPLNLRSVQRWWQPCLFVLKLSLRAKATQ 349
           ++  W +   V    P+  KSDLRL   + G+PL   +V         +L L++R   T+
Sbjct: 116 VKGQWSRAPSVTSTTPAYRKSDLRLLLGVMGAPLAPINV----SSSSHLLHLTIRDSPTE 171

Query: 348 LSGRRTILRE 319
            S  + IL++
Sbjct: 172 TSSAQYILQQ 181


>At3g42800.1 68416.m04480 expressed protein hypothetical proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 341

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 591 WLLAKSISTIEXPSNSPDLSQIESLWWKMKKVLRKYPSRSK 469
           WL A+S +T    S+S   S  E+  ++ K+ LRK   + K
Sbjct: 71  WLYARSSTTTTNSSDSSSFSSSEAESYRTKRRLRKLAEQGK 111


>At1g60810.1 68414.m06845 ATP citrate-lyase -related similar to ATP
           citrate-lyase GI:949989 from [Rattus norvegicus]
          Length = 423

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 433 SIKPEECAALVATMPLRIKAVIE 365
           S+  E CA LVAT+PL IK  +E
Sbjct: 157 SLTFEICAPLVATLPLEIKGELE 179


>At1g09430.1 68414.m01055 ATP-citrate synthase (ATP-citrate
           (pro-S-)-lyase/citrate cleavage enzyme), putative
           similar to ATP-citrate-lyase (GI:16648642) [Arabidopsis
           thaliana]; similar to ATP-citrate (pro-S-)-lyase (EC
           4.1.3.8) (Citrate cleavage enzyme)(SP:Q91V92) {Mus
           musculus}; Location of EST gb|Z34587
          Length = 424

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 460 KAKLLAVWESIKPEECAALVATMPLRIKAVI 368
           K   L   +S+  E CA L+AT+PL ++A I
Sbjct: 148 KTIFLPAEKSMTLEVCAPLIATLPLEVRAKI 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,044,910
Number of Sequences: 28952
Number of extensions: 195188
Number of successful extensions: 473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)