Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30614
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16280.3 68417.m02471 flowering time control protein / FCA ga...    29   3.5  
At4g16280.2 68417.m02470 flowering time control protein / FCA ga...    29   3.5  
At4g16280.1 68417.m02469 flowering time control protein / FCA ga...    29   3.5  
At1g53325.1 68414.m06044 F-box family protein-related contains w...    29   3.5  
At3g43190.1 68416.m04558 sucrose synthase, putative / sucrose-UD...    29   4.6  
At1g48040.1 68414.m05354 protein phosphatase 2C-related / PP2C-r...    29   4.6  
At4g31600.1 68417.m04489 UDP-glucuronic acid/UDP-N-acetylgalacto...    28   8.1  
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ...    28   8.1  
At1g58090.1 68414.m06583 F-box family protein contains F-box dom...    28   8.1  

>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 533

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 474 HISPFTQSIHFFLGLPLPLKP 536
           HI+P  + +H   GLPLPL+P
Sbjct: 410 HITPLKKPLHSPQGLPLPLRP 430


>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 747

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 474 HISPFTQSIHFFLGLPLPLKP 536
           HI+P  + +H   GLPLPL+P
Sbjct: 410 HITPLKKPLHSPQGLPLPLRP 430


>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 505

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 474 HISPFTQSIHFFLGLPLPLKP 536
           HI+P  + +H   GLPLPL+P
Sbjct: 168 HITPLKKPLHSPQGLPLPLRP 188


>At1g53325.1 68414.m06044 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain; similar to suppressor of nim1-1 (GI:22023774)
           [Arabidopsis thaliana]
          Length = 168

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 517 RPKKKWMDCVKGDMCKRGVSEEMV 446
           +PK+ W+  V+GD+CK+   +E+V
Sbjct: 129 KPKQAWVYIVRGDLCKKIKIDEVV 152


>At3g43190.1 68416.m04558 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative strong similarity to
           SP|P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP
           glucosyltransferase) {Arabidopsis thaliana} (SUS1)
          Length = 808

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 173 TLKYVLAVEEEHLSHL*PRTLYSNFAN**S*F*SYLGLAKTDENIMNFVQ 24
           TL++ L   EE+L  L P TLYS F +         G   T E ++N ++
Sbjct: 205 TLQHNLRKAEEYLMELKPETLYSEFEHKFQEIGLERGWGDTAERVLNMIR 254


>At1g48040.1 68414.m05354 protein phosphatase 2C-related /
           PP2C-related similar to protein phosphatase-2C
           GB:AAC36698 GI:3643085 from [Mesembryanthemum
           crystallinum]
          Length = 377

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 496 DCVKGDMCKRGVSEEMVYD-RGVWKEKACCIDPR*LGEGQENYEDDVKSYTYFVNTSIGD 320
           DC +  +C+RGV+ +M +D R  ++ +   I+   LG     +ED   +    V  +IGD
Sbjct: 201 DC-RAVLCRRGVAVDMSFDHRSTYEPERRRIED--LGG---YFEDGYLNGVLAVTRAIGD 254

Query: 319 WTTTNKF 299
           W   N F
Sbjct: 255 WELKNPF 261


>At4g31600.1 68417.m04489 UDP-glucuronic
           acid/UDP-N-acetylgalactosamine transporter-related
           contains weak similarity to UDP-glucuronic
           acid/UDP-N-acetylgalactosamine transporter (UDP-
           GlcA/UDP-GalNAc transporter) (Swiss-Prot:Q9NTN3) [Homo
           sapiens]
          Length = 323

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 516 LPLPLKPSIFIVKALLPSSLSFRLITCPYHPKRVRLNF-FVTGVTFRFPL 662
           L LP    + IV    P+SLS  L  C Y P  V L    V G+   F +
Sbjct: 196 LSLPFLSILIIVTGEFPNSLSLLLAKCSYLPFLVILILSLVMGIVLNFTM 245


>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 304

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 635 HRCHFQISSDIFIPYSIHSRYSTQLSQHSHLCCMPSRFI 751
           H C   +SS   +PY   SR S+ L    H    P  F+
Sbjct: 116 HSCVIDLSSSSSLPYLTPSRVSSGLPGKQHTSSSPPSFV 154


>At1g58090.1 68414.m06583 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 371

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 517 RPKKKWMDCVKGDMCKR 467
           RPK  W+  V+GD+CK+
Sbjct: 332 RPKAAWVYIVRGDLCKK 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,965,791
Number of Sequences: 28952
Number of extensions: 357872
Number of successful extensions: 871
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)