Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30613
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07)                   36   0.043
SB_49208| Best HMM Match : G_glu_transpept (HMM E-Value=0)             33   0.30 
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_47450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_29630| Best HMM Match : Sigma54_activat (HMM E-Value=1)             28   6.5  
SB_51730| Best HMM Match : Methyltransf_6 (HMM E-Value=8.8)            28   6.5  
SB_35438| Best HMM Match : GXGXG (HMM E-Value=1.9)                     28   6.5  
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)          28   6.5  
SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)                   28   6.5  
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  
SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)                  28   8.6  

>SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07)
          Length = 487

 Score = 35.5 bits (78), Expect = 0.043
 Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
 Frame = -1

Query: 406 SKLA-ISGVSKTATSI--ATEMHGAQ*PTLMVPADGVHYCRDGPLFGAWVIGGEAN-PPL 239
           S+LA +SG +K   S+   T M+G+Q P    P+   +     P++G+     + +  P 
Sbjct: 189 SRLAHVSGPAKVGASLHSRTPMYGSQTPGSQTPS---YAASRTPMYGSQTPTHDGSRTPH 245

Query: 238 YPGS---THRASRLQPNTG------DNTAARRLMVGYNFGAISPLARPYTGIARTRQVPS 86
           Y GS   +H  SR   + G       NT AR     Y F A +P   P  G A     P+
Sbjct: 246 YGGSMTPSHDPSRTPLHGGAWDPTLPNTPARNDDFDYGFDASTP--SPAAGYA-----PN 298

Query: 85  LVDPQHPGRT*TSHTPNHKSPAM 17
             +P  PG     +TPN   PAM
Sbjct: 299 TPNPATPGGYGGPYTPNTPGPAM 321


>SB_49208| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 596

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 25/72 (34%), Positives = 33/72 (45%)
 Frame = -1

Query: 238 YPGSTHRASRLQPNTGDNTAARRLMVGYNFGAISPLARPYTGIARTRQVPSLVDPQHPGR 59
           Y G+TH  S L PN GD  AA    + ++FG  S      TGI    Q+ +    +HP +
Sbjct: 404 YEGTTH-VSVLAPN-GDAVAATTT-ISFHFG--SKFMGRTTGILYNNQMAAFAVAEHPNK 458

Query: 58  T*TSHTPNHKSP 23
           T      N  SP
Sbjct: 459 TYEREASNFISP 470


>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +1

Query: 19  WPATCDWAYGLS----MCDQGVGGRQATAPVGCERYPYTAGPVGL*HQSCT 159
           W   CD ++G+     +C Q +G R+A +  G  R+    GP+ +   SCT
Sbjct: 413 WGTVCDDSWGMDDAHVVCHQ-LGFRRAVSSYGSARFGQGRGPIWMDDVSCT 462


>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1232

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 146  CYKPTGPAVYGYRSHPTGAVACR 78
            CY  TGP  YGY +H  G   C+
Sbjct: 1133 CYSSTGPKSYGYTTH-NGHSVCK 1154


>SB_47450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 146 CYKPTGPAVYGYRSHPTGAVACR 78
           CY  TGP  YGY +H  G   C+
Sbjct: 15  CYSSTGPKSYGYTTH-NGHSVCK 36


>SB_29630| Best HMM Match : Sigma54_activat (HMM E-Value=1)
          Length = 1118

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 146 CYKPTGPAVYGYRSHPTGAVACR 78
           CY  TGP  YGY +H  G   C+
Sbjct: 476 CYSSTGPKSYGYTTH-NGHSVCK 497


>SB_51730| Best HMM Match : Methyltransf_6 (HMM E-Value=8.8)
          Length = 409

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
 Frame = -1

Query: 364 IATEMHGAQ*PTLMVPADGVHYCRDGPLFGAWVIGGEANPPLYPGSTHRASR-----LQP 200
           I+   +G++ P +    D +H   D  L    ++GG A+  L+   TH  SR     +QP
Sbjct: 57  ISKTEYGSKLPNITNSIDTLHINTD--LITDSIVGGRASNTLFVIQTHNLSRSYPFSVQP 114

Query: 199 NTG--DNTAARRLMVGYNFGAISPLARP 122
                DN AA  L+    F  +  + RP
Sbjct: 115 TRALFDNVAA-NLISSMRFYVVDSIGRP 141


>SB_35438| Best HMM Match : GXGXG (HMM E-Value=1.9)
          Length = 602

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
 Frame = -1

Query: 364 IATEMHGAQ*PTLMVPADGVHYCRDGPLFGAWVIGGEANPPLYPGSTHRASR-----LQP 200
           I+   +G++ P +    D +H   D  L    ++GG A+  L+   TH  SR     +QP
Sbjct: 57  ISKTEYGSKLPNITNSIDTLHINTD--LITDSIVGGRASNTLFVIQTHNLSRSYPFSVQP 114

Query: 199 NTG--DNTAARRLMVGYNFGAISPLARP 122
                DN AA  L+    F  +  + RP
Sbjct: 115 TRALFDNVAA-NLISSMRFYVVDSIGRP 141


>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
          Length = 1248

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 78  STSDGTCR-VRAIPVYGRASGLIAPK 152
           S  +G C  VRAI VY R + L+APK
Sbjct: 421 SACEGLCSWVRAIEVYDRVAKLVAPK 446


>SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)
          Length = 1223

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
 Frame = -1

Query: 364 IATEMHGAQ*PTLMVPADGVHYCRDGPLFGAWVIGGEANPPLYPGSTHRASR-----LQP 200
           I+   +G++ P +    D +H   D  L    ++GG A+  L+   TH  SR     +QP
Sbjct: 656 ISKTEYGSKLPNITNSIDTLHINTD--LITDSIVGGRASNTLFVIQTHNLSRSYPFSVQP 713

Query: 199 NTG--DNTAARRLMVGYNFGAISPLARP 122
                DN AA  L+    F  +  + RP
Sbjct: 714 TRALFDNVAA-NLISSMRFYVVDSIGRP 740


>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 262  GGEANPPLYPGSTHRASRLQPN 197
            GG   PPL PGS HR +   P+
Sbjct: 1024 GGLQGPPLIPGSPHRGASPMPH 1045


>SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1099

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 146  CYKPTGPAVYGYRSHPTGAVACR 78
            CY  TGP  YGY +H  G   C+
Sbjct: 1000 CYSSTGPKSYGYTTH-QGHSVCK 1021


>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
          Length = 682

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 262 GGEANPPLYPGSTHRASRLQPN 197
           GG   PPL PGS HR +   P+
Sbjct: 157 GGLQGPPLIPGSPHRGASPMPH 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,229,698
Number of Sequences: 59808
Number of extensions: 604215
Number of successful extensions: 1600
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)