Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30613
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    30   1.3  
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea...    29   4.0  
At2g44290.1 68415.m05511 protease inhibitor/seed storage/lipid t...    29   4.0  
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea...    29   4.0  
At5g09730.1 68418.m01127 glycosyl hydrolase family 3 protein bet...    28   7.0  
At2g44300.1 68415.m05512 lipid transfer protein-related low simi...    27   9.3  

>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
            protein / CHD family protein similar to chromatin
            remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
            GI:6478518; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
            (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -2

Query: 276  GHGSSEARLIPHYTRVLLTVPRDSSLTPVTTPPLAVSWSGTTLVL 142
            G  SSE +L PH+ R ++TVP   S  P T PP   + + +  VL
Sbjct: 1960 GISSSENKL-PHWLRNVVTVPTVKSPEPPTLPPTVSAIAQSVRVL 2003


>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
            family protein contains 5 WD-40 repeats (PF00400);
            related to TGF-beta resistance-associated  protein TRAG
            (GI:15624071) {Mus musculus};  similar to beta-transducin
            repeats containing protein - Homo sapiens,PID:e1284220;
            3' EST no_NP:TC8031
          Length = 1446

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 321  FRLTASIIAVMALCSGHGSSEARLIPHYTRVLLTVPR 211
            F  TAS+   + LCS H S  A L+   + + L  P+
Sbjct: 974  FHHTASLAIPLPLCSDHASEHAELVRSLSGISLNEPK 1010


>At2g44290.1 68415.m05511 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein (YLS3) similar to
           lipid transfer protein Picea abies GI:2627141; contains
           Pfam profile: PF00234: Protease inhibitor/seed
           storage/LTP family; identical to cDNA YLS3 mRNA for
           non-specific lipid transfer protein (nLTP) like protein,
           partial cds GI:13122283
          Length = 205

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 577 QIYTRQPLALPSLMLTTCKTTSCPALTNVD 488
           Q+     LALPS+   T   T CPAL ++D
Sbjct: 91  QVNVSLALALPSVCHATADITKCPALLHLD 120


>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to Dystrophia myotonica-containing WD repeat
           motif protein  DMR-N9 protein  (DMWD) (DM9) (SP:Q08274)
           [Mus musculus]; simlar to DMR protein GI:18028289 [Homo
           sapiens];
          Length = 544

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -1

Query: 697 PGPCAWTTPRY--LGAHRLYXX-LSARFNRRRQLQDPCCECVTQIYTRQPLALPSLMLTT 527
           P PC    P+   + AHR++   LS     +  L   C E   +I+TR      S    T
Sbjct: 468 PAPCMRDVPKLSPVVAHRVHTEPLSGLIFTQESLITACREGHLKIWTRPDTQPSSSSEAT 527

Query: 526 CKTTSCPALTN 494
             TTS P+LT+
Sbjct: 528 NPTTSKPSLTS 538


>At5g09730.1 68418.m01127 glycosyl hydrolase family 3 protein
           beta-xylosidase, Hypocrea jecorina, EMBL:Z69257
          Length = 773

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
 Frame = -1

Query: 355 EMHGAQ*PTLMVPADGVHYCRDGPLFGAWVIGGEANP-PLYPGSTHRASRLQPNTGDNTA 179
           +++G   P  +  AD     RDG   G  ++   A   PL P +    + + PN      
Sbjct: 377 QLYGGLGPKDVCTADNQELARDGARQGIVLLKNSAGSLPLSPSAIKTLAVIGPNAN---- 432

Query: 178 ARRLMVGYNFGAISPLARPYTGIART 101
           A   M+G   G       P  G+A T
Sbjct: 433 ATETMIGNYHGVPCKYTTPLQGLAET 458


>At2g44300.1 68415.m05512 lipid transfer protein-related low
           similarity to lipid transfer protein Picea abies
           GI:2627141; contains Pfam profile: PF00234: Protease
           inhibitor/seed storage/LTP family
          Length = 204

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 577 QIYTRQPLALPSLMLTTCKTTSCPALTNVD 488
           QI     LALPS+       T CPAL ++D
Sbjct: 90  QINVSLALALPSVCHAAADVTKCPALLHLD 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,552,402
Number of Sequences: 28952
Number of extensions: 393087
Number of successful extensions: 982
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)