Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30606
         (761 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    29   0.054
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.5  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   2.0  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   2.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   2.0  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   6.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   6.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   8.1  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 28.7 bits (61), Expect = 0.054
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
 Frame = +1

Query: 445 EFPTPLDVRTTILNLQNNKLTGIPKDV-ASXXXXXXXXXXXXSIMGLDLGSVSELPGLTV 621
           +F  P+++    L L +NKL    KD+  +            S+  LD  +      L  
Sbjct: 241 QFFRPVELSLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYELDFDTFRNTKKLQW 300

Query: 622 LKLGNNRLIEYPQDLKNGFSLTKLEELDLGGNDIRTALTTDLF 750
           L   +NR+ E P DL     L  L  +D   N +R +L  +LF
Sbjct: 301 LDTSHNRISEIPNDLFR--FLGNLRIVDFSHNRLR-SLPDNLF 340



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 682 LTKLEELDLGGNDIR 726
           L +LEELDL  N +R
Sbjct: 41  LNRLEELDLSNNRLR 55


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 494 FCKFSIVVRTSKGVGNSVSPYPEQSTTKLLESPSVWHT 381
           +C FS+    S    N V P+PE+S   +  +P +W++
Sbjct: 313 YCAFSLYPLKSTFYLNVVRPFPERS---MGITPMIWNS 347


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 686 VSENPFFKSCGYSIN 642
           V E P ++SC +SIN
Sbjct: 49  VKEEPIYESCRFSIN 63


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 686 VSENPFFKSCGYSIN 642
           V E P ++SC +SIN
Sbjct: 49  VKEEPIYESCRFSIN 63


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 686 VSENPFFKSCGYSIN 642
           V E P ++SC +SIN
Sbjct: 49  VKEEPIYESCRFSIN 63


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 124 SATTGRGV*ASWSLTNAITDATCRLSSGV 38
           SAT+G G   + SLT  +  A C   S V
Sbjct: 122 SATSGGGANLTNSLTGPVRPAACTPDSRV 150


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 598 SELPGLTVLKLGNNRLI 648
           SELP L   KL NN ++
Sbjct: 78  SELPALKSRKLNNNNVV 94


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 176 GIGVSSDFIPASQVTSVISNN 114
           G+G  S ++ A +VT V  NN
Sbjct: 128 GVGFYSAYLVADKVTVVSKNN 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,488
Number of Sequences: 336
Number of extensions: 3137
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)