Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30606
(761 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10) 48 8e-06
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06) 39 0.005
SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06) 38 0.009
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31) 36 0.047
SB_19634| Best HMM Match : LRR_1 (HMM E-Value=2.6e-17) 35 0.083
SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20) 34 0.14
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0) 33 0.19
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37) 31 1.0
SB_15974| Best HMM Match : LRR_1 (HMM E-Value=7.1e-15) 30 1.8
SB_46788| Best HMM Match : LRR_1 (HMM E-Value=9.1e-12) 29 5.5
SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27) 29 5.5
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32) 28 7.2
SB_25208| Best HMM Match : PAN (HMM E-Value=0.019) 28 7.2
>SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10)
Length = 212
Score = 48.0 bits (109), Expect = 8e-06
Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Frame = +1
Query: 367 CPKPCVCHTE---GD-SSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGIPKD-VAS 531
CP C C E G+ S+ +V+C+G L FP PL RT+ L L +N+L+ + D
Sbjct: 74 CPAKCECSREKIAGELSTGILVNCTGRRLRNFPLPLPPRTSTLLLNDNRLSLLRYDFFLG 133
Query: 532 XXXXXXXXXXXXSIMGLDLGSVSELPGLTVLKLGNNRLIEYPQDLKNGFS-LTKLEELDL 708
I ++ G+ L L L L NR N F LT L+ L L
Sbjct: 134 LNNIRTLNLRRNGIKEIEFGAFRNLTALESLYLFRNRFFGIG---PNAFERLTALQVLSL 190
Query: 709 GGNDIRTALTTDLFS 753
N + T LT +FS
Sbjct: 191 VDNRL-TGLTRSMFS 204
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 41.5 bits (93), Expect = 7e-04
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 4/146 (2%)
Frame = +1
Query: 301 LLEDVQLTANAEGTATQSGDSTCPKPCVCHTEGDSS---NFVVDCSGYGLTEFPTPLDVR 471
LL +Q + S TCP C C+ E ++ D S GL P ++
Sbjct: 10 LLSTLQCVRLGQANVISSVPITCPAYCSCYGEHRVDIYCGYLADDSFSGLRHVPRNFPMQ 69
Query: 472 TTILNLQNNKLTGIPKDVASXXXXXXXXXXXXSIMGLDLGSV-SELPGLTVLKLGNNRLI 648
++L+L NN ++ I + + + + SV +L L L L NRL
Sbjct: 70 VSLLSLYNNLISTIHSNAFRNLTALRSLNLGANRLSVLPRSVFRDLASLRSLDLSANRLS 129
Query: 649 EYPQDLKNGFSLTKLEELDLGGNDIR 726
P+D G L+ L++L L N +R
Sbjct: 130 SLPEDTFEG--LSSLQDLFLDFNRLR 153
>SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06)
Length = 150
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +1
Query: 343 ATQSGDSTCPKP----CVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTG 510
A + CP+P C C G +N V C GL EFP + + TT L+L NKL
Sbjct: 5 AATGAHAPCPRPAVGTCTCVQTGSYTN--VKC--LGLDEFPLDVPINTTSLDLSENKLVS 60
Query: 511 IP 516
P
Sbjct: 61 FP 62
>SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06)
Length = 298
Score = 37.9 bits (84), Expect = 0.009
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 367 CPKPCVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGIP 516
CP+ C C+T S + +C G LT FP +D T L L N+L +P
Sbjct: 5 CPQKCSCYTR---SWLITNCRGKYLTSFPDQVDNTTVELILTYNRLKALP 51
>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
Length = 870
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 598 SELPGLTVLKLGNNRLIEYPQDLKNGFSLTKLEELDLGGNDI 723
S L G+ ++ L NN + ++P+ L F L LE DL N I
Sbjct: 304 SNLSGVNIIDLSNNEIRDFPEQLFRVFLLRNLESADLSSNAI 345
Score = 35.5 bits (78), Expect = 0.047
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 367 CPKPCVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGIP 516
CP+ C C +VDCS GL P + +NL+ N + +P
Sbjct: 484 CPRECTCAVREIDQTVLVDCSERGLHRLPFKMPAGELEVNLRGNAIRELP 533
>SB_19634| Best HMM Match : LRR_1 (HMM E-Value=2.6e-17)
Length = 267
Score = 34.7 bits (76), Expect = 0.083
Identities = 32/89 (35%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = +1
Query: 466 VRTTILNLQNNKLTGIPKDVASXXXXXXXXXXXXS---IMGLDLGSVSELPGLTVLKLGN 636
V T L L +N LT I DV + + I LD + GLTVL L +
Sbjct: 77 VDLTKLILASNSLTEISGDVFNLPALVLLDELYLAYNKIAELDSKVFAGYSGLTVLDLHD 136
Query: 637 NRLIEYPQDLKNGFSLTKLEELDLGGNDI 723
N L P+D+ L LE LDL NDI
Sbjct: 137 NLLTSIPEDI---IILRDLERLDLTNNDI 162
Score = 30.7 bits (66), Expect = 1.4
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Frame = +1
Query: 475 TILNLQNNKLTGIPKDVASXXXXXXXXXXXXSIMGLDLGSVSELPGLTVLKLGNNRLIEY 654
T+L+L +N LT IP+D+ I GL + + L L L N L E
Sbjct: 130 TVLDLHDNLLTSIPEDIIILRDLERLDLTNNDISGLPY-KIGNMSNLKSLVLNGNPLREL 188
Query: 655 PQDL-------KNG-FSLTKLEELDLGGNDI 723
+D+ +G ++ LE LDL N+I
Sbjct: 189 RRDIVMIAVIDVDGLLRMSVLETLDLQNNNI 219
>SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)
Length = 681
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +1
Query: 583 DLGSVSELPGLTVLKLGNNRLIEYPQDLKNGFSLTKLEELDLGGNDI 723
++ +S L L VL LG NR+ + + N +LTKL+ LDL GN I
Sbjct: 199 EISGLSSLKSLRVLMLGKNRI----RKINNLEALTKLDVLDLHGNRI 241
>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
Length = 680
Score = 33.5 bits (73), Expect = 0.19
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +1
Query: 439 LTEFPTPLDV--RTTILNLQNNKLTGIPKDVASXXXXXXXXXXXXSIMGLDLGSVSELPG 612
L E P L + +LNL NKL + D + + + S + +
Sbjct: 98 LEELPESLGKLSKLRVLNLTGNKLEKLRDDFGAGLASLTELRIDENDLSELSVSFTLMKN 157
Query: 613 LTVLKLGNNRLIEYPQDLKNGFSLTKLEELDLGGNDI 723
L VL+LG+N + P+D N L KLE ++L N+I
Sbjct: 158 LKVLELGDNHIERLPEDFGN---LRKLEVVNLSQNNI 191
>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 33.5 bits (73), Expect = 0.19
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 2/117 (1%)
Frame = +1
Query: 373 KPCVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGI-PKDVASXXXXXX 549
KPC C G+ V+C G LT P + T LNL N + + PK +
Sbjct: 36 KPCYCL--GNR----VNCEGKHLTAIPVGIPSDITALNLGYNNIVDLDPKQLLKFTALKE 89
Query: 550 XXXXXXSIMGLDLGSVSELPGLTVLKLGNNRLIEYPQDLKNGF-SLTKLEELDLGGN 717
+ + + L L VLKL NR+ ++ F KL++L+L N
Sbjct: 90 LDLSRNFFTSILASAFNRLSSLEVLKLSKNRI----STIRGAFWGQNKLQQLNLERN 142
>SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 32.3 bits (70), Expect = 0.44
Identities = 24/88 (27%), Positives = 41/88 (46%)
Frame = +1
Query: 466 VRTTILNLQNNKLTGIPKDVASXXXXXXXXXXXXSIMGLDLGSVSELPGLTVLKLGNNRL 645
++ T L LQ N ++ +P +++ + + +SEL L NN L
Sbjct: 39 LKVTSLILQGNIISVLPDSISNFKNLVHLDVSSNGLAYIS-ARISELDKLLTFIGRNNNL 97
Query: 646 IEYPQDLKNGFSLTKLEELDLGGNDIRT 729
E P++ SL KLE+L+L GN + +
Sbjct: 98 DELPKEFG---SLAKLEKLNLSGNRLES 122
>SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1243
Score = 31.5 bits (68), Expect = 0.77
Identities = 25/79 (31%), Positives = 36/79 (45%)
Frame = +1
Query: 481 LNLQNNKLTGIPKDVASXXXXXXXXXXXXSIMGLDLGSVSELPGLTVLKLGNNRLIEYPQ 660
LNLQNN++T +P +A + + V++L L VL L +N + P
Sbjct: 149 LNLQNNQITNLPSSLADMNGLCYLNLEANELK-IVPEVVTKLEKLQVLILSDNEIGALPA 207
Query: 661 DLKNGFSLTKLEELDLGGN 717
DL +L L EL L N
Sbjct: 208 DLN---ALENLRELYLDDN 223
>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
Length = 1655
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 379 CVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGIPKD 522
CV T G S + + +T FP+ L +TI++L N L +P D
Sbjct: 799 CVPITHGSKSLVLTASHHHTITTFPSSLPQTSTIIDLSENLLKVLPPD 846
>SB_15974| Best HMM Match : LRR_1 (HMM E-Value=7.1e-15)
Length = 272
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 589 GSVSELPGLTVLKLGNNRLIEYPQDLKNGFSLTKLEELDLGGNDIRT 729
G + +L +L L NNRL P DL L L+ LD+ N +++
Sbjct: 58 GQLKDLADARILVLSNNRLTSLPADLD---ELRSLQVLDVANNKLKS 101
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/90 (26%), Positives = 35/90 (38%)
Frame = +1
Query: 478 ILNLQNNKLTGIPKDVASXXXXXXXXXXXXSIMGLDLGSVSELPGLTVLKLGNNRLIEYP 657
IL L NN+LT +P D+ + L ++ L L L + N L P
Sbjct: 68 ILVLSNNRLTSLPADLDELRSLQVLDVANNKLKSLP-KAIGGLSSLQTLDVQGNNLQSLP 126
Query: 658 QDLKNGFSLTKLEELDLGGNDIRTALTTDL 747
++ N L L L++ N AL L
Sbjct: 127 LEIGN---LKLLRSLNVSNNPKLDALPASL 153
>SB_46788| Best HMM Match : LRR_1 (HMM E-Value=9.1e-12)
Length = 139
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 481 LNLQNNKLTGIPKDVASXXXXXXXXXXXXSIMGLDLGSVSELPGLTVLKLGNNRLIEYPQ 660
LNLQNN++T +P +A + + V++L L VL L +N + P
Sbjct: 48 LNLQNNQITNLPSSLADMNGLCYLNLEANELK-IVPEVVTKLEKLQVLILSDNEIGALPA 106
Query: 661 DL 666
DL
Sbjct: 107 DL 108
>SB_20569| Best HMM Match : LRR_1 (HMM E-Value=1.1e-27)
Length = 309
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +1
Query: 481 LNLQNNKLTGIPKDVASXXXXXXXXXXXXSIMGLDLGSVSELPGLTVLKLGNNRLIEYPQ 660
L+ N +T +P ++ + L +LP L L L N+ E+P+
Sbjct: 165 LSAGKNMITSLPDKISGLVSLQWLSLRENHLSSLP-SEFFKLPKLAHLDLNMNKFEEFPE 223
Query: 661 DLKNGFSLTKLEELDLGGNDIRT 729
+L L LE L L GN I++
Sbjct: 224 NL---IGLVSLECLSLRGNCIKS 243
>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
Length = 1206
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 367 CPKPCVC-HTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGI 513
CP C C +T G ++ G LT P + + T L +N++T +
Sbjct: 960 CPSSCSCVYTSGSGPRRIL-VKGQELTAIPKTMPLDTFALMFSSNRITNV 1008
>SB_25208| Best HMM Match : PAN (HMM E-Value=0.019)
Length = 245
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 479 IVVRTSKGVGNSVSPYPEQSTTKLLESP 396
++++T G+ SVS Y E T KLLE P
Sbjct: 11 LLIQTITGISASVSQYFETHTDKLLEVP 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,156,875
Number of Sequences: 59808
Number of extensions: 385659
Number of successful extensions: 994
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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