Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30605
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16740.1 68414.m02009 ribosomal protein L20 family protein si...    85   6e-17
At3g11760.1 68416.m01443 expressed protein                             32   0.44 
At5g50710.1 68418.m06283 hypothetical protein                          29   3.1  
At5g50610.1 68418.m06269 hypothetical protein                          29   3.1  
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T...    27   9.4  
At4g11950.1 68417.m01901 hypothetical protein                          27   9.4  
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-...    27   9.4  

>At1g16740.1 68414.m02009 ribosomal protein L20 family protein
           similar to ribosomal protein L20 GI:3603025 from
           [Guillardia theta]
          Length = 126

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 41/101 (40%), Positives = 62/101 (61%)
 Frame = +2

Query: 260 KRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITAACEQHN 439
           K+ +F+LA  + GR +NC  IA   V +AL Y+ + R+ KK +M+ LW  RI A   QH 
Sbjct: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQHG 62

Query: 440 ITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAK 562
           +   +   GL + NI L+RK LS+L+  EP +F+AL  V++
Sbjct: 63  VNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSR 103


>At3g11760.1 68416.m01443 expressed protein 
          Length = 702

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 443 TLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAKYK 568
           TL SLR  + R N   +    SD+ SWE + F++L ++  YK
Sbjct: 56  TLGSLRRSVKR-NFTKEAVGESDVVSWEDEEFQSLCSLTSYK 96


>At5g50710.1 68418.m06283 hypothetical protein 
          Length = 185

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 1   LGFIFVNNLVVVFTNPIYLKFTNSIE*LKFPMVFN 105
           L FI V   V+V  +PI+L+F+NS      P V N
Sbjct: 32  LSFIVVVFCVIVVFSPIWLQFSNSFFLFTIPRVIN 66


>At5g50610.1 68418.m06269 hypothetical protein 
          Length = 185

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 1   LGFIFVNNLVVVFTNPIYLKFTNSIE*LKFPMVFN 105
           L FI V   V+V  +PI+L+F+NS      P V N
Sbjct: 32  LSFIVVVFCVIVVFSPIWLQFSNSFFLFTIPRVIN 66


>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
           (TITAN3) very strong similarity to SMC2-like condensin
           (TITAN3) [Arabidopsis thaliana] GI:14279543; contains
           Pfam profiles PF02483: SMC family C-terminal domain,
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1175

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 314 YSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITAACEQHNITLFS 454
           YS  VRN  R+ V    A+ +K +D  S+  + +TA  + +++ + S
Sbjct: 508 YSDPVRNFDRSKVKGVVAKLIKVKDRSSMTALEVTAGGKLYDVVVDS 554


>At4g11950.1 68417.m01901 hypothetical protein
          Length = 327

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
 Frame = -2

Query: 702 IKKQRHLNYFFFSFNHASNITSLRFRFI-PVG*HLSCPSMNLSVSSLYLATAARASNVFG 526
           +++    N+  + ++   N+T  ++R + PV   L   + N +   +  A      NV G
Sbjct: 102 VRQNLGFNWSSYIYSTGYNLTGYKYRLVSPV---LGLLAYNSNPDGV--AVNPYEVNVMG 156

Query: 525 SHEAKSDKDFLSNIILALSKPSLKENSVILC 433
           + +      FLS+      KP+ K+NS +LC
Sbjct: 157 TEQNPILIKFLSSEASGSPKPNTKKNSSVLC 187


>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
           domain-containing protein low similarity to NUB1
           (NEDD8-interacting protein) [Homo sapiens] GI:13383476;
           contains Pfam profile PF00627: UBA/TS-N domain
          Length = 562

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 480 LALSKPSLKENSVILCCSQAA 418
           L LS+  +KENS IL C QAA
Sbjct: 58  LTLSQLGIKENSKILSCRQAA 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,470,245
Number of Sequences: 28952
Number of extensions: 278852
Number of successful extensions: 558
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)