Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30604
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5088| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.64 
SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_4810| Best HMM Match : NACHT (HMM E-Value=1.4e-09)                  28   7.9  

>SB_5088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = +2

Query: 2   EYRKWTSMANDNDIISHFSVP 64
           EYR+W SM +++++++HF+ P
Sbjct: 86  EYRRWKSMTSEHELLAHFTDP 106


>SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +3

Query: 465 NFRG-TSYHCFCIVFSSILNLFYFVELNNVV 554
           N+RG T       +F+SIL L++++E+NNV+
Sbjct: 761 NYRGITLLLSLSKIFASILRLYFYLEMNNVM 791


>SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = -1

Query: 168 VISNIIFHSY-----LKAIGLIRLVSNIIFHNRHRNSGVPGTEKCDI 43
           +I + + HSY     +K   +  +   I FH R+ N    G  KCD+
Sbjct: 419 IICHCLLHSYDHELLVKITEIYTIFVKIFFHERNHNIEAYGCSKCDL 465


>SB_4810| Best HMM Match : NACHT (HMM E-Value=1.4e-09)
          Length = 682

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = -1

Query: 168 VISNIIFHSY-----LKAIGLIRLVSNIIFHNRHRNSGVPGTEKCDI 43
           +I + + HSY     +K   +  +   I FH R+ N    G  KCD+
Sbjct: 465 IICHCLLHSYDHELLVKITEIYTIFVKIFFHERNHNIEAYGCSKCDL 511


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,584,717
Number of Sequences: 59808
Number of extensions: 389386
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)