Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30604
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20470.1 68417.m02986 hypothetical protein                          29   3.7  
At3g56410.2 68416.m06274 expressed protein                             28   4.9  
At3g56410.1 68416.m06273 expressed protein                             28   4.9  
At5g28650.1 68418.m03508 WRKY family transcription factor DNA-bi...    27   8.5  

>At4g20470.1 68417.m02986 hypothetical protein 
          Length = 140

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 474 GTSYHCFCIVFSSILNLFYFVELNNVVILSHYF 572
           G   HC  ++ SS+L  F+F   +++  LS +F
Sbjct: 47  GFVLHCTFLLLSSLLTFFFFFRFSSIFSLSLFF 79


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 4   VPQMDIDGERQRYNITF-LCSGYTTISVPIMEDDI*DQP 117
           +PQ+   G+RQRY +    CSG    S+    D + D P
Sbjct: 394 LPQVSPQGKRQRYQVRCGSCSGVLKFSIREKADTVLDSP 432


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 4   VPQMDIDGERQRYNITF-LCSGYTTISVPIMEDDI*DQP 117
           +PQ+   G+RQRY +    CSG    S+    D + D P
Sbjct: 347 LPQVSPQGKRQRYQVRCGSCSGVLKFSIREKADTVLDSP 385


>At5g28650.1 68418.m03508 WRKY family transcription factor
           DNA-binding protein WRKY3, parsley, PIR:S72445
          Length = 330

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 267 PKPLLARNRNLCKRESFLPHGPP 335
           P PL+  N+N+C  +SFL   PP
Sbjct: 109 PPPLMLFNQNMCLDKSFLELKPP 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,661
Number of Sequences: 28952
Number of extensions: 270432
Number of successful extensions: 474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)