Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30599
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g43150.1 68416.m04546 hypothetical protein 31 0.75
At4g26630.1 68417.m03837 expressed protein 31 1.00
At5g41780.1 68418.m05087 myosin heavy chain-related weak similar... 30 1.3
At5g42710.1 68418.m05202 hypothetical protein 30 1.7
At1g18670.1 68414.m02330 protein kinase family protein contains ... 30 1.7
At4g10940.1 68417.m01779 PHD finger family protein contains Pfam... 29 4.0
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 29 4.0
At2g05290.1 68415.m00557 expressed protein similar to zinc finge... 29 4.0
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 29 4.0
At5g01950.1 68418.m00114 leucine-rich repeat transmembrane prote... 28 7.0
At3g32260.1 68416.m04113 hypothetical protein 28 7.0
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 28 7.0
At3g42556.1 68416.m04417 hypothetical protein contains Pfam prof... 27 9.3
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 27 9.3
At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein si... 27 9.3
>At3g43150.1 68416.m04546 hypothetical protein
Length = 194
Score = 31.1 bits (67), Expect = 0.75
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 410 SNPDKEKMDFWEKIYDKHYRIWDE 481
S KE DF +K+ DKH R++DE
Sbjct: 53 SKDKKEAYDFMDKVVDKHRRLYDE 76
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/71 (21%), Positives = 34/71 (47%)
Frame = +2
Query: 407 ISNPDKEKMDFWEKIYDKHYRIWDETTNQSKNEPQIDTFKKEPEIDTYQNEPEIDTCKKE 586
++ PD ++D K D+ D+ + KNE +T K E +++ ++E + + +
Sbjct: 46 MAEPDNMEIDAQIKKDDEKAETEDKESEVKKNEDNAETQKMEEKVEVTKDEGQAEATNMD 105
Query: 587 TEIDTYKNEPE 619
+ D K + +
Sbjct: 106 EDADGKKEQTD 116
>At5g41780.1 68418.m05087 myosin heavy chain-related weak similarity
to M protein, serotype 5 precursor (SP:P02977)
{Streptococcus pyogenes} and to Myosin heavy chain,
non-muscle (SP:Q99323) (Zipper protein) (Myosin II)
{Drosophila melanogaster}
Length = 537
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +3
Query: 426 RRWTFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHT 605
+RW+FG K TN E M+ H + + IH + IH + K I T
Sbjct: 307 KRWSFGSKLNTNLLEKKMEELAEDFRMKMEDHIRILHRRIHV---AEQIHLESKSSYIKT 363
Query: 606 KMNQKSIRPNMNR 644
+ N ++ NR
Sbjct: 364 RDNTQTEENRGNR 376
>At5g42710.1 68418.m05202 hypothetical protein
Length = 807
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +3
Query: 408 SQTRTKRRWTFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKS--IHAK 581
S++R + + ++ + T T + PT + HK + ++ QK +H N+K +
Sbjct: 372 SKSRKRSKASYKKDGETTTKNVIKRNPTPTENKHKVV-ARSQQKPLHKLSNKKEKLQRER 430
Query: 582 KKQKSIHTKMNQKSI 626
++ + T +QK +
Sbjct: 431 HRENGVTTNHSQKPL 445
>At1g18670.1 68414.m02330 protein kinase family protein contains
Protein kinases ATP-binding region signature,
PROSITE:PS00107 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 662
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +3
Query: 426 RRWTFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHT 605
RR T RK T P +H K+N S+H ++ S +K QK +
Sbjct: 457 RRGTESRKPTRKPPAFAKLAPAEDVRHHSQKFQKRNGHSVHNSIDSDSTLFEKMQKPSNH 516
Query: 606 KMNQKSIRPNMNRK*CPLS 662
+ ++ S N ++ P S
Sbjct: 517 EKDEASHVKNASQGDVPFS 535
>At4g10940.1 68417.m01779 PHD finger family protein contains Pfam
profile: PF00097 zinc finger, C3HC4 type
Length = 192
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 553 LVCIDFWFFFECIDLW 506
L C WF FECID W
Sbjct: 44 LDCCQHWFCFECIDNW 59
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 495 LKTNHKSIHSKKNQKSIHTK---MNQKSIHAKKKQKSIHTKMNQKS 623
++TN K + +K +K H+K QKSI K+ + K Q S
Sbjct: 322 IETNRKDVDKRKKEKGKHSKEIEQMQKSIKELNKKMELFNKKRQDS 367
>At2g05290.1 68415.m00557 expressed protein similar to zinc finger
protein [Arabidopsis thaliana] GI:976277
Length = 383
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 383 NLNSELTLISNPDKEKMDFWEKIYDKHYRIWDETTNQSKNEPQID-TFKKEPEI 541
NLNS + NPDK++M W + +R++D + + + FK E ++
Sbjct: 36 NLNSIMGRFLNPDKQRMSKWILDMPRIWRLYDRVRGIALSRDRFQFIFKYEEDL 89
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +2
Query: 386 LNSELTLISNPDKEKMDFWEKIYDKHYRIWDETTNQ-SKNEPQIDTFKKEPEIDTYQNEP 562
+NS L L S K+ D ++ D+H R +ET N+ + E ++D+ K++ +++ + +
Sbjct: 365 MNSSLQLASLEQKKTDDRVLRLVDEHKRKKEETLNKILQLEKELDS-KQKLQMEIQELKG 423
Query: 563 EIDTCKKETEID 598
++ K E E D
Sbjct: 424 KLKVMKHEDEDD 435
>At5g01950.1 68418.m00114 leucine-rich repeat transmembrane protein
kinase, putative receptor protein kinases
Length = 1032
Score = 27.9 bits (59), Expect = 7.0
Identities = 24/94 (25%), Positives = 44/94 (46%)
Frame = +2
Query: 155 FFSLGLKYAMHMDELGYLFKNDFQKDVEPTPEDIKMRERIVRLWTNFAKSGNPIPDENHY 334
F +G +H+ EL L + + P + + E + +W N + S IP+E
Sbjct: 150 FNEIGTDDYLHVREL-LLMNMNLSGTLSPELQKLAHLEILDFMWNNISGS---IPNEIGQ 205
Query: 335 LNTNWLPVTNDNLYCLNLNSELTLISNPDKEKMD 436
+++ L + N N L SEL +SN ++ ++D
Sbjct: 206 ISSLVLLLLNGNKLSGTLPSELGYLSNLNRFQID 239
>At3g32260.1 68416.m04113 hypothetical protein
Length = 309
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 221 FQKDVEPTPEDIKMRERIVRLWTNF 295
+ +++ P E K+++R+VRLW F
Sbjct: 11 YLREINPALEQYKIKKRVVRLWRLF 35
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 104 YYYRFDYVGELNIAQKIFFSLGLKYAMHMDELGYLFKND 220
+YY Y GEL + F ++ K + M E G L +N+
Sbjct: 146 FYYDSLYYGELGLNDNHFPNIEAKLPIRMAEFGVLHRNE 184
>At3g42556.1 68416.m04417 hypothetical protein contains Pfam profile
PF03778: Protein of unknown function (DUF321)
Length = 113
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/48 (39%), Positives = 19/48 (39%)
Frame = -1
Query: 647 FPVHVWAYRFLVHFCMYRFLFLFCMYRFLVHFGMYRFLVLF*MYRFVV 504
F V Y F V Y F L Y F V G Y F VL Y F V
Sbjct: 21 FVVLTGKYNFTVLAGKYDFTVLAGKYDFTVLVGKYDFTVLVGKYDFTV 68
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 491 QSKNEPQIDTFKKEPEIDTYQNEPEIDTCKKETEIDT 601
+S+NE ++D + E E T + EID +E E +T
Sbjct: 238 ESENEAEVDRTETESEDGTDSTDNEIDDSDEEGESET 274
>At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein
similar to SP|Q08484 GTPase-activating protein GYP1
{Saccharomyces cerevisiae}; contains Pfam profile
PF00566: TBC domain
Length = 440
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +2
Query: 272 IVRLWTNFAKSGNPIPDENHYLNTNWLPVTNDNLYCLNLNSELTLISN-PDKEKMD-FWE 445
I RLW + G+ +PD Y+ ++L +D L L+ + + + P D E
Sbjct: 359 INRLWDTYLAEGDALPDFLVYIYASFLLTWSDELKKLDFQEMVMFLQHLPTHNWSDQELE 418
Query: 446 KIYDKHYRIWDETTNQSKN 502
+ + Y +W N S N
Sbjct: 419 MVLSRAY-MWHSMFNNSPN 436
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,930
Number of Sequences: 28952
Number of extensions: 360863
Number of successful extensions: 1320
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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