Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30598
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      29   0.039
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      29   0.039
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    25   0.48 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    25   0.64 
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    24   1.5  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   7.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 418 HTPSWLPVMPNSSHLDAVPQATPISRSRVHNKKVRTFP 531
           HTPS  P+ P +      P A PIS S + +   R  P
Sbjct: 189 HTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSP 226


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 418 HTPSWLPVMPNSSHLDAVPQATPISRSRVHNKKVRTFP 531
           HTPS  P+ P +      P A PIS S + +   R  P
Sbjct: 81  HTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSP 118


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 517 VRTFPLCFDDTDMTAM 564
           VR F +CFDD D+ ++
Sbjct: 97  VRQFTICFDDVDLNSL 112


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 332 LLKGMMINTKQCPSAKNWRHPVRAKARSHTLHHGCQSC 445
           LL G +     CP  +N    +    +  T+  GC++C
Sbjct: 2   LLDGFIRKFVLCPECENPETELLVSTKRSTISQGCKAC 39


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 619 IEGQKLRDTFTWNKNESIITPEQFAEVL 702
           ++G +  D+ TWN ++ +  P+Q + +L
Sbjct: 337 LKGIERADSVTWNPHKLLTAPQQCSTLL 364


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 355 YKAVSVSQELATPRESKSKKPH 420
           Y  V+ +Q+ +TP E+   KP+
Sbjct: 425 YGNVNENQDCSTPTENSPTKPY 446


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,931
Number of Sequences: 336
Number of extensions: 4197
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)