Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30597
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72280.1 68414.m08356 endoplasmic reticulum oxidoreductin 1 (...    74   1e-13
At2g38960.2 68415.m04787 endoplasmic reticulum oxidoreductin 1 (...    65   4e-11
At2g38960.1 68415.m04788 endoplasmic reticulum oxidoreductin 1 (...    65   4e-11
At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa...    31   0.81 
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ...    31   0.81 
At2g39850.1 68415.m04894 subtilase family protein contains simil...    31   1.1  
At4g30520.1 68417.m04333 leucine-rich repeat family protein / pr...    28   5.7  
At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1) iden...    28   5.7  
At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1) iden...    28   5.7  
At1g59980.1 68414.m06757 DNAJ heat shock N-terminal domain-conta...    27   10.0 
At1g14170.1 68414.m01675 KH domain-containing protein location o...    27   10.0 

>At1g72280.1 68414.m08356 endoplasmic reticulum oxidoreductin 1
           (ERO1) family protein contains Pfam domain, PF04137:
           Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
          Length = 469

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 3/209 (1%)
 Frame = +3

Query: 126 RTSTEMPQKSYCVVFILFALA--IVQAVGYDTELTKPCD-STACFDELHGSLGDCSCKVD 296
           R +   P  +  VVF+  A++      VG+       C  S     +  G + DC C  +
Sbjct: 15  RKTWRWPLATLVVVFLAVAVSSRTNSNVGFFFSDRNSCSCSLQKTGKYKGMIEDCCCDYE 74

Query: 297 TIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCHIKTCTKESVPG 476
           T+D  N   + P +Q +VT  +FR+YKV L  +CPFW DD  C ++ C +  C +   P 
Sbjct: 75  TVDNLNTEVLNPLLQDLVTTPFFRYYKVKLWCDCPFWPDDGMCRLRDCSVCECPENEFP- 133

Query: 477 YETGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQYEIAKWKVHDDA 656
               +   +V   P+    K  +   +  +D           +   N +       HDD 
Sbjct: 134 --EPFKKPFVPGLPSDDL-KCQEGKPQGAVDRTIDNRAFRGWVETKNPW------THDDD 184

Query: 657 HDNFCESXXXXXXXXXXXLTLNPERYTGY 743
            D+               L LNPERYTGY
Sbjct: 185 TDS--------GEMSYVNLQLNPERYTGY 205


>At2g38960.2 68415.m04787 endoplasmic reticulum oxidoreductin 1
           (ERO1) family protein contains Pfam domain, PF04137:
           Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
          Length = 478

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 43/160 (26%), Positives = 71/160 (44%)
 Frame = +3

Query: 264 GSLGDCSCKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCH 443
           G + DC C  +T++  N   + P +Q +V   ++R++KV L  +CPFW DD  C ++ C 
Sbjct: 67  GIVEDCCCDYETVNRLNTEVLNPLLQDLVKTPFYRYFKVKLWCDCPFWPDDGMCRLRDCS 126

Query: 444 IKTCTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQY 623
           +  C +   P          V + P ++Y+   Q       +  PQ + ++ T+      
Sbjct: 127 VCECPESEFP---------EVFKKPLSQYNPVCQ-------EGKPQAT-VDRTLDTR--- 166

Query: 624 EIAKWKVHDDAHDNFCESXXXXXXXXXXXLTLNPERYTGY 743
               W V D+   +  +            L LNPERYTGY
Sbjct: 167 AFRGWTVTDNPWTS--DDETDNDEMTYVNLRLNPERYTGY 204


>At2g38960.1 68415.m04788 endoplasmic reticulum oxidoreductin 1
           (ERO1) family protein contains Pfam domain, PF04137:
           Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
          Length = 472

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 43/160 (26%), Positives = 71/160 (44%)
 Frame = +3

Query: 264 GSLGDCSCKVDTIDFFNNVKIFPRIQSIVTKDYFRFYKVNLKKECPFWADDSRCAMKYCH 443
           G + DC C  +T++  N   + P +Q +V   ++R++KV L  +CPFW DD  C ++ C 
Sbjct: 67  GIVEDCCCDYETVNRLNTEVLNPLLQDLVKTPFYRYFKVKLWCDCPFWPDDGMCRLRDCS 126

Query: 444 IKTCTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQY 623
           +  C +   P          V + P ++Y+   Q       +  PQ + ++ T+      
Sbjct: 127 VCECPESEFP---------EVFKKPLSQYNPVCQ-------EGKPQAT-VDRTLDTR--- 166

Query: 624 EIAKWKVHDDAHDNFCESXXXXXXXXXXXLTLNPERYTGY 743
               W V D+   +  +            L LNPERYTGY
Sbjct: 167 AFRGWTVTDNPWTS--DDETDNDEMTYVNLRLNPERYTGY 204


>At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 663

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 279 SPPRTRGAHRSRL-YCRKASLAP 214
           SPPRTRG  R R+ YC +A++ P
Sbjct: 569 SPPRTRGGKRGRVYYCTQAAIRP 591


>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1006

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 462 ESVPGYE-TGYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQY 623
           ++  GY+ T YNN+     P+T YS +  +  + +        Y N T  AAN +
Sbjct: 179 QTAGGYQSTNYNNQTAGSYPSTNYSNQTPASNQGNYTDYTSNPYQNYTPDAANTH 233


>At2g39850.1 68415.m04894 subtilase family protein contains
           similarity to subtilisin-like protease C1 GI:13325079
           from [Glycine max]
          Length = 774

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
 Frame = +3

Query: 411 DDSRCAMKYCHIKTCTKESVPG--YETGYNNEYVDETPATKYSKEA--------QSDC-K 557
           DD+  A    H+   TK   PG  YET Y  +Y+D      Y+ E         + DC K
Sbjct: 588 DDNEFAYGSGHLNA-TKVRDPGLVYETHYQ-DYIDYLCKLGYNTEKLRSHVGSDKIDCSK 645

Query: 558 SDLDHDPQLSYLNMT 602
           +++DHD  L+Y  MT
Sbjct: 646 TEIDHDADLNYPTMT 660


>At4g30520.1 68417.m04333 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 648

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 522 WQAFHLHTHYYIQFHSQVHFPSCKSL-YGSIS-LHTYCHQP 406
           W A H H+H+Y   H+ + F +  SL   S+S L  +C+ P
Sbjct: 581 WAASHNHSHFY---HANISFKTISSLSTTSVSRLDAHCNDP 618


>At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1)
           identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
           thaliana] GI:7141304; contains Pfam profiles PF02824:
           TGS domain, PF01966: HD domain, PF04607: Region found in
           RelA / SpoT proteins
          Length = 816

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = -3

Query: 614 GSTNGHIQIAQLRIVIQIRLTVGL 543
           GS N + QIAQLRIV++ + +VG+
Sbjct: 393 GSINDYNQIAQLRIVVKPKPSVGV 416


>At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1)
           identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
           thaliana] GI:7141304; contains Pfam profiles PF02824:
           TGS domain, PF01966: HD domain, PF04607: Region found in
           RelA / SpoT proteins
          Length = 883

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = -3

Query: 614 GSTNGHIQIAQLRIVIQIRLTVGL 543
           GS N + QIAQLRIV++ + +VG+
Sbjct: 393 GSINDYNQIAQLRIVVKPKPSVGV 416


>At1g59980.1 68414.m06757 DNAJ heat shock N-terminal
           domain-containing protein similar to Altered Response to
           Gravity [Arabidopsis thaliana] GI:4249662; contains Pfam
           profile PF00226 DnaJ domain
          Length = 414

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 309 RSQLCRLYRSSPPRTRGAHRSRLYCRKAS 223
           R+++C  Y   PP  +G+ +SR + +K S
Sbjct: 349 RNEICAAYTIFPPTKQGSSKSRSWSKKKS 377


>At1g14170.1 68414.m01675 KH domain-containing protein location of
           EST 219C14T7 , gb|N38506
          Length = 454

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 89  LLSLVL*YSCHGADIHRDATEKLLCCVYFICSSDSTGGWLRHG 217
           L+S  L  S     + RD  +    CV FIC +++ GG +  G
Sbjct: 220 LMSAALTSSHRNYAVRRDIADAREFCVCFICPAENVGGVIGKG 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,012,290
Number of Sequences: 28952
Number of extensions: 299967
Number of successful extensions: 757
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)