Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30594
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0671 - 24164490-24164544,24164920-24165086,24165787-241659...    28   6.6  
11_06_0293 + 22018128-22018556                                         28   8.8  
01_01_0778 + 6024154-6024315,6024725-6024802,6024909-6025071,602...    28   8.8  

>01_05_0671 -
           24164490-24164544,24164920-24165086,24165787-24165941,
           24166291-24166458,24167471-24167552
          Length = 208

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 11  SGRSKLRILDCLLSGLSVNIGIIYTSVEFYLSRTPAR 121
           +G S   +   LL GL    GI++TS  +YL RT  R
Sbjct: 160 NGMSGWLVALILLLGLGAIGGIVFTSYTYYLRRTSGR 196


>11_06_0293 + 22018128-22018556
          Length = 142

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 370 AAPPFKPKRITASRQK*AGWLYLLLRTHQTSYHPFVTKTVLG 495
           AA P +P R+   R+    W+  LLR ++T +   +   V G
Sbjct: 43  AALPSRPPRVRLDRRSVVAWIKRLLRVNKTGHSGTLDPKVTG 84


>01_01_0778 +
           6024154-6024315,6024725-6024802,6024909-6025071,
           6025484-6025788,6025897-6025961,6026570-6026763,
           6027233-6027441,6028147-6028325,6029345-6029459,
           6029520-6029558
          Length = 502

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 226 PFTRKPTGTKVGVFWIPKGFCLRKGSFGTT 315
           PF RKPT    G+F++P G  + +   G++
Sbjct: 165 PFYRKPTPAMGGLFFVPIGIFVARRQVGSS 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,992,826
Number of Sequences: 37544
Number of extensions: 451889
Number of successful extensions: 839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)