Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30594
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45080| Best HMM Match : DAGAT (HMM E-Value=0)                       30   1.7  
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   29   3.9  
SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   5.1  
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  

>SB_45080| Best HMM Match : DAGAT (HMM E-Value=0)
          Length = 337

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/75 (32%), Positives = 36/75 (48%)
 Frame = -3

Query: 410 REAVMRFGLKGGAAVVPFRATIN*DFAVLDIIVVPKEPFLKQKPLGIQKTPTFVPVGFLV 231
           R   ++  ++ GA++VP  A    D  V + +  P+   L++    IQKT  F PV F  
Sbjct: 209 RYGFIKLAIRNGASLVPVYAFGEND--VFNQVSNPRGSMLRRIQTKIQKTVAFAPVLF-- 264

Query: 230 KGYLGRGIHIYGSGV 186
               GRGI  Y  G+
Sbjct: 265 ---YGRGIFQYTFGL 276


>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 217  PKYPFTRKPTGTKVGVFWIPKGFCLRKGSFGT-TIMSRTAKS*LMVARNGTTAAPPFK 387
            P   F R  T + V VFW P    LR+G   +  + +  A S  ++  NGTTA    K
Sbjct: 1414 PDSIFHRHLTTSAVTVFWYPPVRSLRRGRISSYHLKALEANSSGVIITNGTTAEKTVK 1471


>SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 931

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +2

Query: 44  LLSGLSVNIGII-YTSVEFYLSRTPAR--KRLKIVWKRVRESSKGINNNPKLLNRKYVYP 214
           L+S +SV+ G+  +  V FY++  P R  +    V+   R + +G+ ++  LLN+ ++  
Sbjct: 158 LVSDVSVHPGMSDHDLVHFYINTNPRRATRTPHKVYLFDRMNLEGLQHDMDLLNQSFMVS 217

Query: 215 SLSIPLQEN 241
            LS  ++EN
Sbjct: 218 PLSRSVEEN 226


>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2124

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +2

Query: 44   LLSGLSVNIGII-YTSVEFYLSRTPAR--KRLKIVWKRVRESSKGINNNPKLLNRKYVYP 214
            L+S +SV+ G+  +  V FY++  P R  +    V+   R + +G+ ++  LLN+ ++  
Sbjct: 1548 LVSDVSVHPGMSDHDLVHFYINTNPRRATRTPHKVYLFDRMNLEGLQHDMDLLNQSFMVS 1607

Query: 215  SLSIPLQEN 241
             LS  ++EN
Sbjct: 1608 PLSRSVEEN 1616


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,379,198
Number of Sequences: 59808
Number of extensions: 535360
Number of successful extensions: 1069
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)