Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30594
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ...    30   1.4  
At2g03200.1 68415.m00273 aspartyl protease family protein contai...    28   5.6  
At5g42700.1 68418.m05201 transcriptional factor B3 family protei...    28   7.3  
At4g18200.1 68417.m02705 purine permease family protein similar ...    28   7.3  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    27   9.7  

>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 435

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 113 PARKRLKIVWKRVRESSKGINNNPKLLNRKYVY 211
           P R++L+I  +RVRE  + +  NPKL+  KY +
Sbjct: 127 PVRRKLQIGRERVRERDEDV-ENPKLMECKYYF 158


>At2g03200.1 68415.m00273 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 461

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 324 GHYRSPKGTLP*TETFGYPENTYLCASGFSCKGILREG 211
           G Y S +G L  TETF + +   +   GF C G+  EG
Sbjct: 189 GDYSSTRGLLA-TETFTFEDENSISGIGFGC-GVENEG 224


>At5g42700.1 68418.m05201 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 211

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 101 LSRTPARKRLKIVWKRVRESSKGINNNPKLLNRKYV 208
           + RTP +K + +  KRV    +G+     LLNR YV
Sbjct: 51  IPRTPEKKMVDV--KRVHIQRRGVGKKRDLLNRVYV 84


>At4g18200.1 68417.m02705 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 1128

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 315 RSPKGTLP*TETFGYPENTYLCASGFSCKGILREGYTYLRFRSLGLLFIPL 163
           R PK T      F    +    AS + C G+L   Y YL   ++GLL++P+
Sbjct: 846 RQPKST---DTNFSQSPSFTTLASVYLCTGLLVSAYAYL--SAVGLLYLPV 891


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
           binding domain-containing protein contains Pfam profiles
           PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
           binding domain
          Length = 2176

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 348 GCSEWYNGCPTLQTETHYCFTAEIGGVVVPTLADSPNVLPPFCHENC 488
           GC E  NGCP +Q E    F   +G + +     + NV+ P  +++C
Sbjct: 396 GCEEAKNGCP-MQFEDF--FVLSLGRIDIRQSYHNVNVIYPIGYKSC 439


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,353,012
Number of Sequences: 28952
Number of extensions: 375740
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)