BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30593 (728 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ... 307 6e-84 At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein ... 301 3e-82 At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein ... 301 3e-82 At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein ... 301 3e-82 At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, p... 124 8e-29 At3g06850.2 68416.m00813 branched chain alpha-keto acid dehydrog... 103 9e-23 At3g06850.1 68416.m00812 branched chain alpha-keto acid dehydrog... 103 9e-23 At1g54220.1 68414.m06182 dihydrolipoamide S-acetyltransferase, p... 101 6e-22 At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase, p... 99 3e-21 At1g34430.1 68414.m04277 dihydrolipoamide S-acetyltransferase, p... 94 1e-19 At3g25860.1 68416.m03222 dihydrolipoamide S-acetyltransferase (L... 84 1e-16 At2g45630.2 68415.m05674 oxidoreductase family protein low simil... 33 0.15 At2g45630.1 68415.m05673 oxidoreductase family protein low simil... 33 0.15 At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 31 0.78 At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa... 29 2.4 At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa... 29 2.4 At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA he... 29 2.4 At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 3.2 At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 3.2 At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 3.2 At3g29180.1 68416.m03657 expressed protein 29 3.2 At4g11580.1 68417.m01856 F-box family protein predicted protein,... 29 4.2 At2g38250.1 68415.m04697 DNA-binding protein-related contains si... 28 5.5 At2g29900.1 68415.m03631 presenilin family protein similar to pr... 28 7.3 At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 28 7.3 At1g04200.1 68414.m00410 expressed protein Contains similarity t... 28 7.3 At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu... 27 9.6 At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu... 27 9.6 >At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein similar to SP|Q01205 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Rattus norvegicus}; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme Length = 464 Score = 307 bits (753), Expect = 6e-84 Identities = 143/215 (66%), Positives = 178/215 (82%) Frame = +2 Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181 +A RLKD+QNT A+LTTFNE+DM+++M R ++ D F +KH +KLGLMS F+KAA +AL Sbjct: 247 VATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFLEKHGVKLGLMSGFIKAAVSALQ 306 Query: 182 DQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKAR 361 QPVVNAVI+ ++IIYRDYVDIS+AV T KGLVVPVIR+ M +ADIE TI GLA+KA Sbjct: 307 HQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRDADKMNFADIEKTINGLAKKAT 366 Query: 362 TGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPM 541 G ++I+EM GG+FT+SNGGV+GSL+ TPIINPPQSAILGMH I +RP+ + G VV RPM Sbjct: 367 EGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVQRPMVVGGSVVPRPM 426 Query: 542 MYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIV 646 MY+ALTYDHRLIDGREAV FLR+IK+ VEDP ++ Sbjct: 427 MYVALTYDHRLIDGREAVYFLRRIKDVVEDPQRLL 461 >At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein similar to SP|P36957 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Homo sapiens}; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme Length = 365 Score = 301 bits (739), Expect = 3e-82 Identities = 140/215 (65%), Positives = 175/215 (81%) Frame = +2 Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181 +A RLKD+QNT A+LTTFNE+DM+++M R ++ D F +KH +KLGLMS F+KAA +AL Sbjct: 148 VATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQ 207 Query: 182 DQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKAR 361 QPVVNAVI+ ++IIYRDYVDIS+AV T KGLVVPVIR M +A+IE TI LA+KA Sbjct: 208 HQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINSLAKKAN 267 Query: 362 TGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPM 541 G ++I+EM GG+FT+SNGGV+GSL+ TPIINPPQSAILGMH I RP+ + G VV RPM Sbjct: 268 EGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPM 327 Query: 542 MYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIV 646 MY+ALTYDHRLIDGREAV FLR++K+ VEDP ++ Sbjct: 328 MYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLL 362 >At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein similar to SP|P36957 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Homo sapiens}; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme Length = 463 Score = 301 bits (739), Expect = 3e-82 Identities = 140/215 (65%), Positives = 175/215 (81%) Frame = +2 Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181 +A RLKD+QNT A+LTTFNE+DM+++M R ++ D F +KH +KLGLMS F+KAA +AL Sbjct: 246 VATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQ 305 Query: 182 DQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKAR 361 QPVVNAVI+ ++IIYRDYVDIS+AV T KGLVVPVIR M +A+IE TI LA+KA Sbjct: 306 HQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINSLAKKAN 365 Query: 362 TGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPM 541 G ++I+EM GG+FT+SNGGV+GSL+ TPIINPPQSAILGMH I RP+ + G VV RPM Sbjct: 366 EGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPM 425 Query: 542 MYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIV 646 MY+ALTYDHRLIDGREAV FLR++K+ VEDP ++ Sbjct: 426 MYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLL 460 >At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein similar to SP|P36957 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) {Homo sapiens}; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme Length = 464 Score = 301 bits (739), Expect = 3e-82 Identities = 140/215 (65%), Positives = 175/215 (81%) Frame = +2 Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181 +A RLKD+QNT A+LTTFNE+DM+++M R ++ D F +KH +KLGLMS F+KAA +AL Sbjct: 247 VATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQ 306 Query: 182 DQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKAR 361 QPVVNAVI+ ++IIYRDYVDIS+AV T KGLVVPVIR M +A+IE TI LA+KA Sbjct: 307 HQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINSLAKKAN 366 Query: 362 TGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPM 541 G ++I+EM GG+FT+SNGGV+GSL+ TPIINPPQSAILGMH I RP+ + G VV RPM Sbjct: 367 EGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPM 426 Query: 542 MYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIV 646 MY+ALTYDHRLIDGREAV FLR++K+ VEDP ++ Sbjct: 427 MYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLL 461 >At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide acetyltransferase (E2) subunit of PDC [Arabidopsis thaliana] GI:559395; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain; supporting cDNA gi|5881964|gb|AF066080.1|AF066080 Length = 637 Score = 124 bits (298), Expect = 8e-29 Identities = 76/217 (35%), Positives = 123/217 (56%), Gaps = 7/217 (3%) Frame = +2 Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181 IA+RL +++ L +++ + ++AFRK+ + H +K+ + +KA A AL Sbjct: 419 IAKRLLESKQKIPHLYLQSDVVLDPLLAFRKE----LQENHGVKVSVNDIVIKAVAVALR 474 Query: 182 DQPVVNAV--IEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEK 355 + NA E+ +I+ D VDIS+AVAT KGL+ P+I+N + + I L + LA+K Sbjct: 475 NVRQANAFWDAEKGDIVMCDSVDISIAVATEKGLMTPIIKNADQKSISAISLEVKELAQK 534 Query: 356 ARTGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGM---HGIFERPIALNG-- 520 AR+GKL E GGTF+ISN G++ IINPPQ+ IL + + + E I L+G Sbjct: 535 ARSGKLAPHEFQGGTFSISNLGMYPVDNFCAIINPPQAGILAVGRGNKVVEPVIGLDGIE 594 Query: 521 QVVIRPMMYIALTYDHRLIDGREAVLFLRKIKEGVED 631 + + M + L+ DHR+ DG+ F+ +++ ED Sbjct: 595 KPSVVTKMNVTLSADHRIFDGQVGASFMSELRSNFED 631 >At3g06850.2 68416.m00813 branched chain alpha-keto acid dehydrogenase E2 subunit (din3) identical to branched chain alpha-keto acid dehydrogenase E2 subunit (din3) [Arabidopsis thaliana] GI:7021284 Length = 483 Score = 103 bits (248), Expect = 9e-23 Identities = 62/177 (35%), Positives = 97/177 (54%), Gaps = 3/177 (1%) Frame = +2 Query: 125 SIKLGLMSPFVKAAANALMDQPVVNAVI--EENEIIYRDYVDISVAVATPKGLVVPVIRN 298 +IK + +K+ + AL P VN+ E EII + +I VA+AT GLVVP I+N Sbjct: 303 TIKHTFLPTLIKSLSMALTKYPFVNSCFNAESLEIILKGSHNIGVAMATEHGLVVPNIKN 362 Query: 299 VQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAIL 478 VQ+++ +I ++ L A KL E++ GGT T+SN G G G+P++N P+ AI+ Sbjct: 363 VQSLSLLEITKELSRLQHLAANNKLNPEDVTGGTITLSNIGAIGGKFGSPLLNLPEVAII 422 Query: 479 GMHGIFERP-IALNGQVVIRPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIV 646 + I + P + G V +M + + DHR++DG F + KE VE P ++ Sbjct: 423 ALGRIEKVPKFSKEGTVYPASIMMVNIAADHRVLDGATVARFCCQWKEYVEKPELLM 479 >At3g06850.1 68416.m00812 branched chain alpha-keto acid dehydrogenase E2 subunit (din3) identical to branched chain alpha-keto acid dehydrogenase E2 subunit (din3) [Arabidopsis thaliana] GI:7021284 Length = 483 Score = 103 bits (248), Expect = 9e-23 Identities = 62/177 (35%), Positives = 97/177 (54%), Gaps = 3/177 (1%) Frame = +2 Query: 125 SIKLGLMSPFVKAAANALMDQPVVNAVI--EENEIIYRDYVDISVAVATPKGLVVPVIRN 298 +IK + +K+ + AL P VN+ E EII + +I VA+AT GLVVP I+N Sbjct: 303 TIKHTFLPTLIKSLSMALTKYPFVNSCFNAESLEIILKGSHNIGVAMATEHGLVVPNIKN 362 Query: 299 VQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAIL 478 VQ+++ +I ++ L A KL E++ GGT T+SN G G G+P++N P+ AI+ Sbjct: 363 VQSLSLLEITKELSRLQHLAANNKLNPEDVTGGTITLSNIGAIGGKFGSPLLNLPEVAII 422 Query: 479 GMHGIFERP-IALNGQVVIRPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIV 646 + I + P + G V +M + + DHR++DG F + KE VE P ++ Sbjct: 423 ALGRIEKVPKFSKEGTVYPASIMMVNIAADHRVLDGATVARFCCQWKEYVEKPELLM 479 >At1g54220.1 68414.m06182 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase GI:5669871 [Zea mays]; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain Length = 539 Score = 101 bits (241), Expect = 6e-22 Identities = 67/194 (34%), Positives = 106/194 (54%), Gaps = 4/194 (2%) Frame = +2 Query: 77 IMAFRKKHLDTFTKKHSIK-LGLMSPFVKAAANALMDQPVVNAVIEENEIIYRDYVDISV 253 +MA R + L++F + K + + VKAAA AL P N+ ++ I V+I+V Sbjct: 346 LMALRSQ-LNSFKEASGGKRISVNDLVVKAAALALRKVPQCNSSWTDDYIRQFKNVNINV 404 Query: 254 AVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISN-GGVFG 430 AV T GL VPV+++ + I + LA+KA+ L E+ +GGTFT+SN GG FG Sbjct: 405 AVQTENGLYVPVVKDADRKGLSTIGEEVRLLAQKAKENSLKPEDYEGGTFTVSNLGGPFG 464 Query: 431 SLMGTPIINPPQSAILGMHGIFERPIALNG--QVVIRPMMYIALTYDHRLIDGREAVLFL 604 ++NPPQ+AIL + +R + NG Q M + L+ DHR++DG +L Sbjct: 465 IKQFCAVVNPPQAAILAVGSAEKRVVPGNGPDQFNFASYMPVTLSCDHRVVDGAIGAEWL 524 Query: 605 RKIKEGVEDPATIV 646 + K +E+P +++ Sbjct: 525 KAFKGYIENPKSML 538 >At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase [Zea mays] GI:5669871; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain Length = 539 Score = 98.7 bits (235), Expect = 3e-21 Identities = 61/167 (36%), Positives = 91/167 (54%), Gaps = 3/167 (1%) Frame = +2 Query: 155 VKAAANALMDQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELT 334 +KAAA AL P N+ + I V+I+VAV T GL VPV+++ + I Sbjct: 372 IKAAALALRKVPQCNSSWTDEYIRQFKNVNINVAVQTENGLYVPVVKDADKKGLSTIGEE 431 Query: 335 IAGLAEKARTGKLTIEEMDGGTFTISN-GGVFGSLMGTPIINPPQSAILGMHGIFERPIA 511 + LA+KA+ L E+ +GGTFT+SN GG FG +INPPQ+AIL + +R + Sbjct: 432 VRFLAQKAKENSLKPEDYEGGTFTVSNLGGPFGIKQFCAVINPPQAAILAIGSAEKRVVP 491 Query: 512 LNG--QVVIRPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIV 646 G Q + M + L+ DHR+IDG +L+ K +E P +++ Sbjct: 492 GTGPDQYNVASYMSVTLSCDHRVIDGAIGAEWLKAFKGYIETPESML 538 >At1g34430.1 68414.m04277 dihydrolipoamide S-acetyltransferase, putative similar to dihydrolipoamide S-acetyltransferase (LTA2) [Arabidopsis thaliana] GI:5881963; contains Pfam profiles PF00198: 2-oxo acid dehydrogenases acyltransferase (catalytic domain), PF00364: Biotin-requiring enzyme, PF02817: e3 binding domain Length = 465 Score = 93.9 bits (223), Expect = 1e-19 Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 3/181 (1%) Frame = +2 Query: 101 LDTFTKKHSIKLGLMSPFV-KAAANALMDQPVVNAVIEE-NEIIYRDYVDISVAVATPKG 274 LD KK K M+ + KA A AL PVVN+ + N +Y ++++VAVA G Sbjct: 280 LDALYKKIKSKGVTMTALLAKATALALAKHPVVNSSCRDGNSFVYNSSINVAVAVAIDGG 339 Query: 275 LVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVFGSLMGTPII 454 L+ PV++N + + L +KAR +L +E + GTFT+SN G+FG I+ Sbjct: 340 LITPVLQNADKVDIYSLSRKWKELVDKARAKQLQPQEYNTGTFTLSNLGMFGVDRFDAIL 399 Query: 455 NPPQSAILGMHGIFERPIAL-NGQVVIRPMMYIALTYDHRLIDGREAVLFLRKIKEGVED 631 P AI+ + +A +G++ ++ M + +T DHR+I G + FL+ + +ED Sbjct: 400 PPGTGAIMAVGASQPSVVATKDGRIGMKNQMQVNVTADHRVIYGADLAQFLQTLASIIED 459 Query: 632 P 634 P Sbjct: 460 P 460 >At3g25860.1 68416.m03222 dihydrolipoamide S-acetyltransferase (LTA2) identical to dihydrolipoamide S-acetyltransferase (LTA2) [Arabidopsis thaliana] GI:5881963 Length = 480 Score = 83.8 bits (198), Expect = 1e-16 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 2/164 (1%) Frame = +2 Query: 158 KAAANALMDQPVVNAVIEENEII-YRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELT 334 KAA AL PVVNA ++ + Y ++I+VAVA GL+ PV+++ + + Sbjct: 315 KAAGMALAQHPVVNASCKDGKSFSYNSSINIAVAVAINGGLITPVLQDADKLDLYLLSQK 374 Query: 335 IAGLAEKARTGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIA- 511 L KAR+ +L E + GTFT+SN G+FG I+ P Q AI+ + +A Sbjct: 375 WKELVGKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVAD 434 Query: 512 LNGQVVIRPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDPATI 643 +G ++ M + +T DHR++ G + FL+ + +E+P ++ Sbjct: 435 KDGFFSVKNTMLVNVTADHRIVYGADLAAFLQTFAKIIENPDSL 478 >At2g45630.2 68415.m05674 oxidoreductase family protein low similarity to SP|P36234 Glycerate dehydrogenase (EC 1.1.1.29) (NADH-dependent hydroxypyruvate reductase) {Hyphomicrobium methylovorum}; contains Pfam profile PF00389: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Length = 338 Score = 33.5 bits (73), Expect = 0.15 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = -2 Query: 130 DAVLLSEGVEVLLTECHDVGHVDLVECRQHGVRVLSVLQTLSD 2 D + + + +++T V HVDLVECR+ G+ V + + S+ Sbjct: 83 DLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSFSE 125 >At2g45630.1 68415.m05673 oxidoreductase family protein low similarity to SP|P36234 Glycerate dehydrogenase (EC 1.1.1.29) (NADH-dependent hydroxypyruvate reductase) {Hyphomicrobium methylovorum}; contains Pfam profile PF00389: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Length = 186 Score = 33.5 bits (73), Expect = 0.15 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = -2 Query: 130 DAVLLSEGVEVLLTECHDVGHVDLVECRQHGVRVLSVLQTLSD 2 D + + + +++T V HVDLVECR+ G+ V + + S+ Sbjct: 83 DLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSFSE 125 >At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, putative Length = 506 Score = 31.1 bits (67), Expect = 0.78 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%) Frame = +1 Query: 109 LH*EAQHQTRSDVTFREGGRQRPDGPARGERCYRRKRDNL*GLRRY-FGSGRHTERSRRA 285 +H +H + + R+ P G G+R +R +RD+ G R++ R ER R Sbjct: 386 VHETPKHNSHERERSEKIQRRSPHGNGEGKRQHRDERDD--GRRQHDREDARELERKHRE 443 Query: 286 GHQKRSEHDLC*YRAHHSWASGKSENR*AHDRRNGRRNVHHQQWRRFR 429 ++ S D R S E+R D + R + +++ RR R Sbjct: 444 RKERESREDEDRRRRRRREESRDKESRRERDEDDHRSHRDYKERRRER 491 >At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam profiles: PF02037 SAP domain, PF02891 MIZ zinc finger, PF00628 PHD-finger Length = 885 Score = 29.5 bits (63), Expect = 2.4 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = +2 Query: 2 IAQRLKDAQNTN-AMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANAL 178 I+ RL D+ + N T N I+ SH M+ R+ +DT T+ S+ LG+ A Sbjct: 787 ISLRLGDSASGNHGDPATTNGINSSHQMSTREGSMDTTTETASLLLGMNDSRQDKAKKQR 846 Query: 179 MDQP 190 D P Sbjct: 847 SDNP 850 >At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam profiles: PF02037 SAP domain, PF02891 MIZ zinc finger, PF00628 PHD-finger Length = 873 Score = 29.5 bits (63), Expect = 2.4 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = +2 Query: 2 IAQRLKDAQNTN-AMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANAL 178 I+ RL D+ + N T N I+ SH M+ R+ +DT T+ S+ LG+ A Sbjct: 787 ISLRLGDSASGNHGDPATTNGINSSHQMSTREGSMDTTTETASLLLGMNDSRQDKAKKQR 846 Query: 179 MDQP 190 D P Sbjct: 847 SDNP 850 >At2g06990.1 68415.m00800 HUA enhancer 2 (HEN2) / DExH-box RNA helicase, putative nearly identical to HUA enhancer 2 [Arabidopsis thaliana] GI:16024936 Length = 995 Score = 29.5 bits (63), Expect = 2.4 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 241 RYFGSGRHTERSRRAGHQKRSEHDLC 318 RY GSG + + S RAG + + E +C Sbjct: 460 RYIGSGEYIQMSGRAGRRGKDERGIC 485 >At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 565 Score = 29.1 bits (62), Expect = 3.2 Identities = 26/68 (38%), Positives = 34/68 (50%) Frame = +1 Query: 103 RHLH*EAQHQTRSDVTFREGGRQRPDGPARGERCYRRKRDNL*GLRRYFGSGRHTERSRR 282 RH H ++H+ S RE G +R G R + YRR RD RR GR + RS R Sbjct: 96 RH-HRSSRHRDHS----RERGERRERG-GRDDDDYRRSRDRDHDRRRDDRGGRRSRRS-R 148 Query: 283 AGHQKRSE 306 + + RSE Sbjct: 149 SRSKDRSE 156 >At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 542 Score = 29.1 bits (62), Expect = 3.2 Identities = 26/68 (38%), Positives = 34/68 (50%) Frame = +1 Query: 103 RHLH*EAQHQTRSDVTFREGGRQRPDGPARGERCYRRKRDNL*GLRRYFGSGRHTERSRR 282 RH H ++H+ S RE G +R G R + YRR RD RR GR + RS R Sbjct: 96 RH-HRSSRHRDHS----RERGERRERG-GRDDDDYRRSRDRDHDRRRDDRGGRRSRRS-R 148 Query: 283 AGHQKRSE 306 + + RSE Sbjct: 149 SRSKDRSE 156 >At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 573 Score = 29.1 bits (62), Expect = 3.2 Identities = 26/68 (38%), Positives = 34/68 (50%) Frame = +1 Query: 103 RHLH*EAQHQTRSDVTFREGGRQRPDGPARGERCYRRKRDNL*GLRRYFGSGRHTERSRR 282 RH H ++H+ S RE G +R G R + YRR RD RR GR + RS R Sbjct: 96 RH-HRSSRHRDHS----RERGERRERG-GRDDDDYRRSRDRDHDRRRDDRGGRRSRRS-R 148 Query: 283 AGHQKRSE 306 + + RSE Sbjct: 149 SRSKDRSE 156 >At3g29180.1 68416.m03657 expressed protein Length = 513 Score = 29.1 bits (62), Expect = 3.2 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = -2 Query: 430 PENAAIADGERSAVHFFDRELTGSR----FFR*PSYGELDISISHVLNVSDDRHDETFRC 263 PE+ A++ E+ V ++ + SR FF+ P+Y E+D+ + H + + E FR Sbjct: 400 PEDLALSSTEKKLVQAYNEKPVLSRPQHNFFKGPNYFEIDLDV-HRFSYISRKGLEAFR- 457 Query: 262 GDRYRN 245 DR +N Sbjct: 458 -DRLKN 462 >At4g11580.1 68417.m01856 F-box family protein predicted protein, Caenorhabditis elegans, PIR2:S44609 ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 Length = 333 Score = 28.7 bits (61), Expect = 4.2 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Frame = +2 Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSI--KLGLMSPFVKAAANA 175 +A K NT LT E+D+S I F+ K F KH + K GL + K + Sbjct: 47 LASHNKTLWNT-VDLTNLQELDVSRIFNFKDKERPIFFYKHPVDHKHGLTNLLTKIISRF 105 Query: 176 LMD 184 +D Sbjct: 106 FLD 108 >At2g38250.1 68415.m04697 DNA-binding protein-related contains similarity to DNA-binding protein GI:170271 from [Nicotiana tabacum] Length = 289 Score = 28.3 bits (60), Expect = 5.5 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = +1 Query: 124 QHQTRSDVTFREGGRQRPDGPARGERCYRRKRDNL*GLRRYF-GSGRHTERSRRAGHQKR 300 +HQ R + +REG R A E +RRK + L R R E RR+ + R Sbjct: 209 RHQVRMESEWREGWEAREKERAEKEEEWRRKMEELEKERLAMERMWRDREEQRRSREEMR 268 Query: 301 SE 306 +E Sbjct: 269 AE 270 >At2g29900.1 68415.m03631 presenilin family protein similar to presenilin [Drosophila melanogaster] GI:2062395; contains Pfam profile PF01080: Presenilin Length = 397 Score = 27.9 bits (59), Expect = 7.3 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Frame = +1 Query: 382 RNGRRNVHHQQWRRFRVSDGNANHQSASICYTGYA--RHLRAAHRSE 516 RN R+V + WR R S NAN + + H+ ++ R+E Sbjct: 235 RNDSRSVQRRVWREQRSSQNNANRNEVRVVESAEVEEEHVGSSERAE 281 >At1g70620.1 68414.m08138 cyclin-related contains weak similarity to Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I) [Bos taurus] Length = 897 Score = 27.9 bits (59), Expect = 7.3 Identities = 15/49 (30%), Positives = 21/49 (42%) Frame = +1 Query: 250 GSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDRRNGRR 396 G R S R+ H K S+H Y +H S +S +R R R+ Sbjct: 849 GKSRRRHVSSRSPHSKHSQHKNTLYSSHDKSRSKRSRSRSRSPHRRHRK 897 >At1g04200.1 68414.m00410 expressed protein Contains similarity to gb|Z69902 from C. elegans Length = 732 Score = 27.9 bits (59), Expect = 7.3 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 Query: 703 LLSSFVMVGWCLS*ILQASDDSGGIF 626 L + + WCL +LQASDD ++ Sbjct: 73 LAKLLIHLSWCLQELLQASDDQSSLY 98 >At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum, EMBL:AB009883 Length = 918 Score = 27.5 bits (58), Expect = 9.6 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +2 Query: 161 AAANALMDQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQ 304 AA+NAL Q V V + + ++ S+++ KGL P+ + + Sbjct: 738 AASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLFTSAR 785 >At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum, EMBL:AB009883 Length = 918 Score = 27.5 bits (58), Expect = 9.6 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +2 Query: 161 AAANALMDQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQ 304 AA+NAL Q V V + + ++ S+++ KGL P+ + + Sbjct: 738 AASNALRQQRFVREVTIQYNLCNEPWIKYSISIVADKGLKKPLFTSAR 785 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,829,143 Number of Sequences: 28952 Number of extensions: 337708 Number of successful extensions: 1009 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 964 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 999 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1594686376 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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