Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30592
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07135.1 68414.m00759 glycine-rich protein                          29   2.4  
At5g19230.1 68418.m02290 expressed protein                             28   5.5  
At1g66440.1 68414.m07548 DC1 domain-containing protein contains ...    28   5.5  
At1g32010.1 68414.m03938 myosin heavy chain-related                    27   9.5  

>At1g07135.1 68414.m00759 glycine-rich protein 
          Length = 155

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +3

Query: 540 IHIVFRYHFNHSLPAVQARCTSLNLN 617
           ++I+F +H  H+LP+V +R +S++ N
Sbjct: 10  LYILFIFHLQHNLPSVSSRPSSVDTN 35


>At5g19230.1 68418.m02290 expressed protein
          Length = 189

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 600 TSLNLNTIRIISNARVLLHKIVAHEENEPGTN*GRSRDSP 719
           T LNL T+    NA  L  ++V   +N+P TN   S   P
Sbjct: 42  TGLNLKTLTKNENAECLADEVVDQLKNQPCTNTNNSAPVP 81


>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 726

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 89  CQEKYNFPSGRIYNMDETGIVTV 21
           C+ K N P G+ YN DE G VT+
Sbjct: 629 CERKIN-PKGQFYNCDEYGCVTL 650


>At1g32010.1 68414.m03938 myosin heavy chain-related
          Length = 835

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 146 RAIGFNQVQVNRFYTNLKKCQEKYNFPSGRIYNMDET 36
           +A+G N + ++R+  NL+  +EK     G++ N + T
Sbjct: 537 QAVGANNLLISRYDRNLRSAREKILELEGKLKNAERT 573


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,893,223
Number of Sequences: 28952
Number of extensions: 250082
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)