Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30590
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19406| Best HMM Match : DUF706 (HMM E-Value=2.8e-31) 196 1e-50
SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44) 30 1.6
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032) 29 2.8
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_25955| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6) 28 8.6
>SB_19406| Best HMM Match : DUF706 (HMM E-Value=2.8e-31)
Length = 203
Score = 196 bits (479), Expect = 1e-50
Identities = 96/187 (51%), Positives = 129/187 (68%), Gaps = 13/187 (6%)
Frame = +2
Query: 74 KPVSMIDPSQLLRPEPTFN------------DKPIDAFRDYSVD-DTDPIKERVRRTYYL 214
K + + DPSQL RPE + DK + FR+Y+++ TD ++E TY L
Sbjct: 22 KQIVLTDPSQLHRPEEQYQEFNKKKKEISRTDKSKEEFRNYNINLQTDVVRE----TYKL 77
Query: 215 MHSNVTVDLVKQKREKWLKFNHFKATVKDALIKLNELVDESDPDTDLPNIVHAFQTAERI 394
MH TV+ V+QK +KW + + TV +A+ L+ LVDESDPDTDLPN HAFQTAERI
Sbjct: 78 MHKYQTVEFVQQKIKKWGSLSKTEMTVMEAVFMLDALVDESDPDTDLPNSAHAFQTAERI 137
Query: 395 REDHPDEDWFHLTGLIHDLGKXMAFYDEPQWCVVGDTFPVGCKWADSIVYGPESFKDNPD 574
R DHPD+DWF L GL+HD+GK +A + +PQWCVVGDTFPVGC++++ V+ PE+F+DNPD
Sbjct: 138 RADHPDKDWFQLVGLLHDMGKVLALWGDPQWCVVGDTFPVGCQFSNKNVF-PETFEDNPD 196
Query: 575 TYNPKYN 595
T P+Y+
Sbjct: 197 TKVPEYS 203
>SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1558
Score = 31.5 bits (68), Expect = 0.70
Identities = 13/67 (19%), Positives = 34/67 (50%)
Frame = +2
Query: 50 KMAAEVEKKPVSMIDPSQLLRPEPTFNDKPIDAFRDYSVDDTDPIKERVRRTYYLMHSNV 229
K +++ + KP+ + PS ++ + D D+ +D+S D ++ + RT ++
Sbjct: 164 KQSSQSQSKPIKPVAPSNTMKKLTPWEDDDADSIKDFSGTDRKKEEKYMERTDEAIYQRA 223
Query: 230 TVDLVKQ 250
+ + +K+
Sbjct: 224 SEEHIKR 230
>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
Length = 210
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 236 DLVKQKREKWLKFNHFKATVKDALIKLNELVDESDPDTDLPNIVHAFQTAERIREDHPDE 415
D + QK K H ++ + L K+ E +D+ + DLP +VH E IR P
Sbjct: 140 DTLYQKVIKPFVLRH-QSQIDSTLEKVGEKMDKYAKEADLPRLVHGSCLVEWIRHSVPKG 198
Query: 416 D 418
D
Sbjct: 199 D 199
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 668 DTHRGSRTSANYRFRSGACTFHIWCCT*DYKC 573
+T GS +S+ +R R+G C W C D C
Sbjct: 112 ETGCGSCSSSQFRCRNGRCVSRSWVCDKDNDC 143
>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
Length = 521
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 38 LTNNKMAAEVEKKPVSMIDPSQLLRPEPTFNDKPIDAFRDYSVDDTD 178
LT NK ++KP +D +PE ++KP D D D T+
Sbjct: 241 LTTNKPEDNADEKPEKKLDDKSEDKPEDNADEKPEDNPEDKPEDKTE 287
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 5/112 (4%)
Frame = +2
Query: 95 PSQLLRPEPTF---NDKPIDAFRDYSVDDTDPIKERVRRTYYLMHSNVTV-DLVKQKREK 262
P +L+ P P + P R+Y D P+ R+ Y + V+ V+
Sbjct: 1706 PPRLMEPRPRSPVRSSSPSGVRREYKGSDRSPVVSVASRSIYRANERVSSPSYVRATTSS 1765
Query: 263 -WLKFNHFKATVKDALIKLNELVDESDPDTDLPNIVHAFQTAERIREDHPDE 415
+ F+ + L K+NE + S P T + T R+ + E
Sbjct: 1766 PSVVSKGFRTSPTSQLHKVNERIPTSSPSTKMYKSASPASTPHRLTDRRDQE 1817
>SB_25955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 50 KMAAEVEKKPVSMIDPSQLLRPEPTFNDKPIDAFRDYSVDDTDPI 184
K + K + I+P++ L+P + + P+D + D DPI
Sbjct: 37 KAIDDKSKAETNFINPNKRLKPGASSTENPVDTLSKANQTDIDPI 81
>SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Frame = +1
Query: 106 SASRADVQ*QAHRRVQGLQRRRHGPHQGT--GPTHLLLDALQCYRRFGQTKTREMAKVQP 279
S R D + + ++ + +RR G + G + D YR T+ + +
Sbjct: 300 SVQRYDFETEKWDFLEPMCKRRDGVGVASYAGRIYAAGDYQLSYREGHSTRQHSLKSQRH 359
Query: 280 LQGHSEGCSHQTQ*AGGRVRPRHGPTKHRARFPD 381
+ GH H G + RH T+H AR D
Sbjct: 360 INGHGHTGGHAVSPTGSKCGIRHHQTQHLARNHD 393
>SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)
Length = 940
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +2
Query: 137 PIDAFRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIKL 316
P D + +D+TDP+ + R + N V +Q+R + H + V +K
Sbjct: 345 PQDLYTSKRLDNTDPVDAVLERPFIDNEDNSKVSCQRQQRNS--QMVHRQGQVPSKKLKF 402
Query: 317 NELVDES 337
+E+V S
Sbjct: 403 HEVVFSS 409
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,843,087
Number of Sequences: 59808
Number of extensions: 457668
Number of successful extensions: 1150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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