Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30590
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit...   207   6e-54
At2g19800.1 68415.m02313 expressed protein similar to myo-inosit...   192   3e-49
At4g26260.1 68417.m03779 expressed protein similar to myo-inosit...   190   1e-48
At5g56640.1 68418.m07071 expressed protein similar to myo-inosit...   188   3e-48
At1g11280.3 68414.m01295 S-locus protein kinase, putative simila...    31   0.57 
At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative ...    28   5.3  
At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative ...    28   5.3  
At4g32750.1 68417.m04660 expressed protein                             28   5.3  
At3g21510.1 68416.m02714 two-component phosphorelay mediator 3 (...    28   5.3  
At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3, ubiqu...    28   7.0  
At3g20960.1 68416.m02649 cytochrome P450 family protein similar ...    27   9.3  

>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 311

 Score =  207 bits (505), Expect = 6e-54
 Identities = 96/189 (50%), Positives = 127/189 (67%), Gaps = 3/189 (1%)
 Frame = +2

Query: 149 FRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIKLNELV 328
           FRDY  +     +  V   Y + H   TVD V++ RE++ K N  + ++ +    LNE +
Sbjct: 51  FRDYDAESER--RRGVEEFYRVNHIGQTVDFVRKMREEYEKLNRTEMSIWECCELLNEFI 108

Query: 329 DESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTGLIHDLGKXM---AFYDEPQWCVVG 499
           DESDPD D P I H  QTAE IR+D+PDEDW HLTGLIHDLGK +   +F + PQW VVG
Sbjct: 109 DESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLLHSSFGELPQWAVVG 168

Query: 500 DTFPVGCKWADSIVYGPESFKDNPDTYNPKYNTKYGMYKPHCGIDNLLMSWSHDEYLYQF 679
           DTFPVGC + +SIV+  + FK+NPD  NP YN+KYG+Y   CG+DN+LMSW HD+Y+Y  
Sbjct: 169 DTFPVGCAFDESIVH-HKYFKENPDYDNPSYNSKYGIYTEGCGLDNVLMSWGHDDYMYLV 227

Query: 680 LLHNKSTIP 706
              N++T+P
Sbjct: 228 AKENQTTLP 236


>At2g19800.1 68415.m02313 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 317

 Score =  192 bits (467), Expect = 3e-49
 Identities = 93/190 (48%), Positives = 121/190 (63%), Gaps = 3/190 (1%)
 Frame = +2

Query: 146 AFRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIKLNEL 325
           +FRDY   +++  ++ V   Y + H + T D VK+ R+++ K N  + ++ +    LN +
Sbjct: 55  SFRDYENGESER-QQGVEEFYRMQHIHQTYDFVKKMRKEYGKLNKMEMSIWECCELLNNV 113

Query: 326 VDESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTGLIHDLGKXM---AFYDEPQWCVV 496
           VDESDPD D P I H  QTAE IR D+PDEDW HLT LIHDLGK +    F   PQW VV
Sbjct: 114 VDESDPDLDEPQIQHLLQTAEAIRRDYPDEDWLHLTALIHDLGKVLLLPEFGGLPQWAVV 173

Query: 497 GDTFPVGCKWADSIVYGPESFKDNPDTYNPKYNTKYGMYKPHCGIDNLLMSWSHDEYLYQ 676
           GDTFPVGC + DS     + FK N D  NPKYNTK G+Y   CG+DN+LMSW HD+Y+Y 
Sbjct: 174 GDTFPVGCTF-DSANIHHKYFKGNHDINNPKYNTKNGVYTEGCGLDNVLMSWGHDDYMYL 232

Query: 677 FLLHNKSTIP 706
               N +T+P
Sbjct: 233 VAKKNGTTLP 242


>At4g26260.1 68417.m03779 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 317

 Score =  190 bits (462), Expect = 1e-48
 Identities = 92/189 (48%), Positives = 122/189 (64%), Gaps = 3/189 (1%)
 Frame = +2

Query: 149 FRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIKLNELV 328
           FRDY V+     ++ V   Y L H N TVD VK+ R ++ K +    ++ +    LNE+V
Sbjct: 57  FRDYDVESER--QKGVEEFYRLQHINQTVDFVKKMRAEYGKLDKMVMSIWECCELLNEVV 114

Query: 329 DESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTGLIHDLGKXMA---FYDEPQWCVVG 499
           DESDPD D P I H  Q+AE IR+D+P+EDW HLT LIHDLGK +    F   PQW VVG
Sbjct: 115 DESDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKVITLPQFGGLPQWAVVG 174

Query: 500 DTFPVGCKWADSIVYGPESFKDNPDTYNPKYNTKYGMYKPHCGIDNLLMSWSHDEYLYQF 679
           DTFPVGC + +S V+  + F +NPD +N  YNTK G+Y   CG++N++MSW HD+Y+Y  
Sbjct: 175 DTFPVGCAFDESNVH-HKYFVENPDFHNETYNTKNGIYSEGCGLNNVMMSWGHDDYMYLV 233

Query: 680 LLHNKSTIP 706
              N ST+P
Sbjct: 234 AKENGSTLP 242


>At5g56640.1 68418.m07071 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 314

 Score =  188 bits (458), Expect = 3e-48
 Identities = 90/189 (47%), Positives = 120/189 (63%), Gaps = 3/189 (1%)
 Frame = +2

Query: 149 FRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIKLNELV 328
           FRDY+ D     ++ V   Y   H+N T+D V++ R ++ K +     + +      E+V
Sbjct: 53  FRDYT-DTNSERQKSVEHFYATQHTNQTLDFVQKMRSEYGKLDKMVMNIWECCELSKEVV 111

Query: 329 DESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTGLIHDLGKXMA---FYDEPQWCVVG 499
           DESDPD D P I H  Q+AE IR+D+P+EDW HLT LIHDLGK +    F   PQW VVG
Sbjct: 112 DESDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKVLTLPQFGGLPQWAVVG 171

Query: 500 DTFPVGCKWADSIVYGPESFKDNPDTYNPKYNTKYGMYKPHCGIDNLLMSWSHDEYLYQF 679
           DTFPVGC + +S V+  + F +NPD  NPKYNTK G+Y   CG++N+LMSW HD+Y+Y  
Sbjct: 172 DTFPVGCAFDESNVH-HKYFMENPDFNNPKYNTKAGIYSEGCGLENVLMSWGHDDYMYLV 230

Query: 680 LLHNKSTIP 706
              N ST+P
Sbjct: 231 AKENGSTLP 239


>At1g11280.3 68414.m01295 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains protein kinase domain,
           Pfam:PF00069; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 808

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 375 SRPLKGSERITLMRTGSTLLASFMI*A----RXWHFMTSRSGAWSETLSPLVVNGLTLSS 542
           S  L GS R  ++  GS  L+ F+I A    + W +   ++ +W   L P  ++GLT   
Sbjct: 424 SSELAGSRRTKII-VGSISLSIFVILAFGSYKYWRYRAKQNDSWKNGLEPQEISGLTFFE 482

Query: 543 M 545
           M
Sbjct: 483 M 483


>At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative
           strong similarity to ubiquitin-conjugating enzyme UBC2
           [Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
           sativum] GI:456568; contains Pfam profile PF00179:
           Ubiquitin-conjugating enzyme
          Length = 148

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 290 TVKDALIKLNELVDESDPDTDL-PNIVHAFQTAERIREDHPDEDW 421
           TV   L+ +  L+ + +PD  L P I H ++T +R++ +   + W
Sbjct: 98  TVSKVLLSICSLLTDPNPDDPLVPEIAHIYKT-DRVKYESTAQSW 141


>At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative
           strong similarity to ubiquitin-conjugating enzyme UBC2
           [Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
           sativum] GI:456568; contains Pfam profile PF00179:
           Ubiquitin-conjugating enzyme
          Length = 148

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 290 TVKDALIKLNELVDESDPDTDL-PNIVHAFQTAERIREDHPDEDW 421
           TV   L+ +  L+ + +PD  L P I H ++T +R++ +   + W
Sbjct: 98  TVSKVLLSICSLLTDPNPDDPLVPEIAHIYKT-DRVKYESTAQSW 141


>At4g32750.1 68417.m04660 expressed protein
          Length = 293

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 281 FKATVKDALIKLNELVDESDPDTDLPNIVHAFQTAER 391
           FKA +  +L+  +E  DE D   ++PN+ H   + +R
Sbjct: 256 FKAWMGPSLLSSDEEEDEPDFYNEVPNVTHTLSSRQR 292


>At3g21510.1 68416.m02714 two-component phosphorelay mediator 3
           (HP3) identical to ATHP3 [Arabidopsis thaliana]
           GI:4156245
          Length = 154

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 233 VDLVKQKR--EKWLKFNHFKATVKDALIKLNELVDESDPDTDLPNIVHAFQTAERIRED 403
           +DLV++++  + + K    +  +    ++L +L DES+PD     +   FQ ++RI  D
Sbjct: 1   MDLVQKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 59


>At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3,
           ubiquitin ligase; contains similarity to
           anaphase-promoting complex subunit 2 GI:6180009 from
           [Homo sapiens]
          Length = 865

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 23/72 (31%), Positives = 33/72 (45%)
 Frame = +2

Query: 266 LKFNHFKATVKDALIKLNELVDESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTGLIH 445
           LK +  +A+++   I LN+L+D    +T   NI  A QT   +RE+    D   LT  I 
Sbjct: 583 LKIHFGEASMQRCEIMLNDLIDSKRVNT---NIKKASQTGAELRENELSVD--TLTSTIL 637

Query: 446 DLGKXMAFYDEP 481
                    DEP
Sbjct: 638 STNFWPPIQDEP 649


>At3g20960.1 68416.m02649 cytochrome P450 family protein similar to
           Cytochrome P450 93A1 (SP:Q42798)  {Glycine max};
          Length = 418

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +2

Query: 275 NHFKATVKDALIKLNELVDESDPDTDLPNIV---HAFQTAE-RIREDH 406
           N F   ++  L++ NE +DE   DTD+ +++   +A + AE +I  +H
Sbjct: 150 NRFNELLEKILVEHNEKLDEEHKDTDMMDVLLAAYADENAEYKITRNH 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,019,685
Number of Sequences: 28952
Number of extensions: 309721
Number of successful extensions: 858
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)