Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30588
(709 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_22077| Best HMM Match : MIP (HMM E-Value=0) 54 2e-07
SB_33719| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42) 39 0.003
SB_39426| Best HMM Match : C4 (HMM E-Value=0) 32 0.40
SB_22927| Best HMM Match : SerH (HMM E-Value=1.1) 31 0.92
SB_24991| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_54783| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_27263| Best HMM Match : Kelch_1 (HMM E-Value=2.10055e-42) 28 6.5
SB_378| Best HMM Match : TTL (HMM E-Value=1.8) 28 6.5
SB_23767| Best HMM Match : DicB (HMM E-Value=7.9) 28 8.5
>SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 58.8 bits (136), Expect = 4e-09
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Frame = +3
Query: 255 VSEFISTLLLLVFGCMACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISGAHMNPSVT 434
++E +++ + + C +C+ + + AL GL S V + H++G +NP+V
Sbjct: 70 LAELLASHVFVFLVCASCVSWPHFQAPSVQHIALTAGLTTSTLVMVMSHVTGGQINPAVA 129
Query: 435 LASLIWGAISFPLAIAFIVAQCAGAILGYGLLIAVSHIDMDG-VCMTLPRTEITLFQALI 611
+A ++ + F+ Q G +LG LL ++ + G + MT+P I + QA+
Sbjct: 130 VAMVVTRRVKPVHGFGFVFRQGLGGLLGAALLFGLTPSSIRGSLGMTVPAPTIQVGQAVA 189
Query: 612 VEAVLTAALSF 644
+E +LT L F
Sbjct: 190 METILTFLLVF 200
>SB_22077| Best HMM Match : MIP (HMM E-Value=0)
Length = 374
Score = 53.6 bits (123), Expect = 2e-07
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 399 HISGAHMNPSVTLASLIWGAISFPLAIAFIVAQCAGAILGYGLLIAVSHIDMDGVC-MTL 575
HISG H+NP+VT++ +I +SF +++ Q G I G +L ++ +D G T+
Sbjct: 192 HISGGHINPAVTISFMIVRKVSFLRGAFYVIGQVGGGIAGSAMLYGLTPVDKRGTLGATV 251
Query: 576 PRTEITLFQALIVEAVLTAAL 638
P ++ QA +E +LT L
Sbjct: 252 PNAGVSTGQAFGIEFLLTFLL 272
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/88 (30%), Positives = 43/88 (48%)
Frame = +3
Query: 243 WRQIVSEFISTLLLLVFGCMACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISGAHMN 422
W + +EF++T + C +C+ P + AL GL ++ GH SG H+N
Sbjct: 47 WVSVFAEFLATFFFVFMVCGSCLLWDKNDPPAVQHIALCAGLGIATWAMAVGHWSGGHIN 106
Query: 423 PSVTLASLIWGAISFPLAIAFIVAQCAG 506
P+VT+ L I+ + +IVAQ G
Sbjct: 107 PAVTVGFLSSNKIAILQGVCYIVAQFFG 134
>SB_33719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = +3
Query: 243 WRQIVSEFISTLLLLVFGCMACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISG--AH 416
W + +E++ TLL + A + G I A GF + Q+F +S H
Sbjct: 16 WICVFAEYLGTLLFMFSVSAASLRWEGTPSTLEIALAAGFSMATV--TQVFRWVSRPLVH 73
Query: 417 MNPSVTLASLIWGAISFPLAIAFIVAQCAGAILGY 521
NP+VT+AS + G S + +++ QC G Y
Sbjct: 74 ANPAVTVASFLAGDTSLVASFLYVIVQCFGVCPAY 108
>SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42)
Length = 365
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/89 (28%), Positives = 40/89 (44%)
Frame = +3
Query: 243 WRQIVSEFISTLLLLVFGCMACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISGAHMN 422
W +I++EFI T L + C + + P + AL GL +S N
Sbjct: 17 WTEILAEFIITSLFVSIVCGTALQNWS-TPPTLTHMALNSGLAAGTFAMCMWDVSSGLFN 75
Query: 423 PSVTLASLIWGAISFPLAIAFIVAQCAGA 509
P++T+ LI G + I +I+AQ G+
Sbjct: 76 PALTIGFLITGKKTLLQTIFYIMAQLTGS 104
>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
Length = 188
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 383 CPNIWTYIWSAHESVRHTGL--ADMGRDIVSAGYCVYS 490
CP W+ +WS + + HTG + G+ + S+G C+ S
Sbjct: 49 CPGGWSSLWSGYSFLMHTGAGGSGTGQSLGSSGSCLES 86
>SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)
Length = 678
Score = 31.1 bits (67), Expect = 0.92
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 197 LASIRMQSDVRVVL*VETNRIGVYFHVAASRVWVHGMYTARWIFTSTTNIRSTRVRFG-- 370
+ S+R S+ V ++ RI + HV G+ F TT +STRV
Sbjct: 284 VVSVRRSSEANPV--TKSTRIDLVSHVTGPSSVASGLTMTTKAFNFTTVTKSTRVSHASS 341
Query: 371 -SLV*CPNIWTYIWSAHESVRHTGLADMGRDIVSAGYCVYSSTMRRSDF 514
S V T + A SV+ + AD+G +I+S+ V +S + F
Sbjct: 342 TSFVGTSLTMTQNFEA-TSVKQSARADLGSNIMSSSTMVMASKESEATF 389
>SB_24991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 548 YVRNSY*QSVS*NRSCALCYYKRNSQRKRYRAPYQR-GQCDGRIHVRSRYMS 396
Y RN+ + + +SC C YK R+ +A Q G C + H +S+ MS
Sbjct: 197 YDRNAKTRQQTNQKSCRFCGYKHRQGREHCKAWNQTCGACGKKNHFKSQCMS 248
>SB_54783| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.3 bits (60), Expect = 6.5
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Frame = -1
Query: 679 FLLTGSQQAQFKNERAAVKTASTIKA*NN-VISVRGNVIQTPSMSMCETAINNPYPKIAP 503
F LT S A + T + N+ ++ + TPS T N+PY A
Sbjct: 109 FALTRSNDHYLATASAPLATPFALTRSNDPCLATASAPLATPSAL---TRSNDPYLATAS 165
Query: 502 AHCATINAIASGNDIAPHISEASVT---DGFMCAPDICPNIWTLN 377
A AT A+ ND P ++ AS T M A DI P+ T N
Sbjct: 166 APLATPFALTRSND--PCLATASATAPNRHTMLASDIAPSQITFN 208
>SB_27263| Best HMM Match : Kelch_1 (HMM E-Value=2.10055e-42)
Length = 559
Score = 28.3 bits (60), Expect = 6.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 406 DICPNIWTLNETTKPNPSAPYI 341
D C N+WT N+ K +AP++
Sbjct: 522 DACTNVWTANQQQKEPCAAPFV 543
>SB_378| Best HMM Match : TTL (HMM E-Value=1.8)
Length = 327
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 444 LIWGAISFPLAIAFIVAQC-AGAILGYGLLIAVSHIDMDGVCMTLPRTE 587
L+WG + + IVA AG GLL+ + + G C L RTE
Sbjct: 249 LLWGLWTNQSMVFIIVASSIAGLTFPVGLLVMMLYYACPGCCHPLSRTE 297
>SB_23767| Best HMM Match : DicB (HMM E-Value=7.9)
Length = 344
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Frame = +3
Query: 504 GAILGYGLLIAVSHIDMDGVCMTLPRTEITLFQALIV----EAVLTAALSFL---NCACW 662
G +L YG +S + G + + +T +A E +LT SF NC C+
Sbjct: 174 GQVLRYGQPFMLSTLPGVGGSLRMHSDRVTFNKAAKKSRKQECLLTDNSSFTAHWNCLCF 233
Query: 663 DPVNKNKQDSVPV 701
DP + + D +PV
Sbjct: 234 DPQQRLENDGMPV 246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,068,795
Number of Sequences: 59808
Number of extensions: 496945
Number of successful extensions: 1346
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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