Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30586
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 33   0.30 
SB_5826| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.93 
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_47681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)               28   6.5  
SB_9647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  

>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -2

Query: 421 KQSTSPKTRHLGSSRSTNGASRYFKHRSPFSSNPSLATKGSTSKLTLRYSPLSFSP 254
           KQ T+PKT    S +++  ASR    ++  S   SL T   TS  T+R   L  SP
Sbjct: 313 KQQTTPKTSRKTSQKTSLNASRKTSRKT--SLKRSLKTSPKTSPKTMRMKSLKTSP 366


>SB_5826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 291 LLVEPFVASDGFDENGDRCLKYLEAPLVDREDPR*RVLGD 410
           LLV  F+A   + E+ +RCLK ++A   +   P  R+L D
Sbjct: 93  LLVAAFIAGSSYAESLERCLKEIQAAKKELRCPECRILVD 132


>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 651 FLSISYCYVHRFRFCRIAVEAPWFVRNVDLHDDLDLESTSKYM 523
           FL +   Y+H   FCR     PW  R +   D  +  +TS++M
Sbjct: 428 FLILFNAYLHEQTFCRWMRHRPWIYRMLSHIDIKEKGATSEFM 470


>SB_47681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 433 GKNGKQSTSPKTRHLGSSRSTNGASRYFKHRSPFSSNPSLATKGSTSKLTLRY 275
           GK+  +   P TR+L  +R+ NG S   ++R P  +   L+ + +  K +LRY
Sbjct: 273 GKSSLRYRGPNTRYLPLARTNNGKSS-LRYRGP--NTRYLSPRTNYGKSSLRY 322


>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
          Length = 625

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 388 GSSRSTNGASRYFKHRSPFSSNPSLATKGSTS 293
           GS  ST+  S   KH SP  S+  + TKG+T+
Sbjct: 492 GSMESTSNDSPLRKHSSPSLSDAIMRTKGTTN 523


>SB_9647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
 Frame = -3

Query: 672 YFGY*IVFLSISYCYVHRFRFCRIAVEAPWFVRNVDLHDDL-DLESTSKYMQSASMRHFD 496
           YF Y ++ L I   Y   FR C  A+E P   +  +  +DL D  +     + +  +H+ 
Sbjct: 16  YFPYRVI-LPIQRNYCDGFRVCSHALELPQLHQVENTSEDLSDRAAYIHVTECSRSKHYI 74

Query: 495 KAARHENPLIVAAGNYIPDPAERMESSRRRPKHVISDPPDPLT 367
              ++ +     + +YI  P  R  +   R KH I  P +  T
Sbjct: 75  IVPKNRSTECSRSKHYIIVPKNR-STECSRSKHYIIVPKNRST 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,662,024
Number of Sequences: 59808
Number of extensions: 377010
Number of successful extensions: 1029
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)