Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30586
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25605.1 68415.m03067 expressed protein                             30   1.8  
At3g14205.1 68416.m01795 phosphoinositide phosphatase family pro...    28   7.1  
At1g61080.1 68414.m06877 proline-rich family protein                   28   7.1  
At3g62900.1 68416.m07066 expressed protein ; expression supporte...    27   9.3  

>At2g25605.1 68415.m03067 expressed protein
          Length = 200

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -3

Query: 519 SASMRHFDKAARHENPLIVAAGNYIPD--PAERMESSRRRP 403
           SA+++HF+   R    L+ A+ + +PD   A+ +ES R+RP
Sbjct: 16  SANVKHFNGYGRLNRNLVRASSSDVPDFLSADWLESRRKRP 56


>At3g14205.1 68416.m01795 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain;  identical to SAC domain protein 2
           (SAC2) GI:31415720
          Length = 808

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 12  NLEYSRIAYQYQKYICTLSVIYVFFFPY 95
           N+ YS+   +Y++ +CT+ +   FFF Y
Sbjct: 144 NVAYSKDEKRYKRLLCTVDLTKDFFFSY 171


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 421 KQSTSPKTRHLGSSRSTNGASRYFKHRSPFSSNPSLATKGSTSKLTL 281
           K+STSP+T    SSR  + +  +   +S F S  S     +T +  L
Sbjct: 237 KESTSPQTGKTSSSRVLSPSESFSDSKSSFGSRNSFCGSPTTPRSVL 283


>At3g62900.1 68416.m07066 expressed protein ; expression supported
           by MPSS
          Length = 1401

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 507 RHFDKAARHENPLIVAAGNYIPDPAERM 424
           RH D  A HENP  ++AG+   D   ++
Sbjct: 376 RHKDLGAHHENPKTISAGSVREDKKAKL 403


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,773,048
Number of Sequences: 28952
Number of extensions: 270582
Number of successful extensions: 792
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)