Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30585
         (761 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22MS3 Cluster: Putative uncharacterized protein; n=1; ...    37   0.47 
UniRef50_Q48UA1 Cluster: Transcriptional activator; n=11; Strept...    33   5.8  

>UniRef50_Q22MS3 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1459

 Score = 37.1 bits (82), Expect = 0.47
 Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
 Frame = +1

Query: 313  TNLLQ--LKERTS*ITVLIITTDLSNLSSLIRFIYSNTEYSFSIP--DASKAMKIPRHFT 480
            TN+L+  LK+R S  + ++    +    +++       E +F IP   +   + I +H  
Sbjct: 1079 TNILENILKKRNSIKSAVVPLASIQKFFTVVYQEILKNEQAFRIPLHVSCYDILIQKHGL 1138

Query: 481  DTFARMNILKLSV*DKCMKALSDNV*INL*YK*VYTNKGIQYK*VSTEQLRNSFPLGLTS 660
               A   + ++    K + A  D    N+  + V T  G+ +K   T+     F LGL  
Sbjct: 1139 KRVAEDKLARIM---KSVYAYKDK---NIKMEMVATFLGLNHKYDETDYYY--FLLGLKY 1190

Query: 661  FSAINKNILDMISSKRQILTKKLIDNMN 744
            F  IN NIL++ S   QI+T+K ID +N
Sbjct: 1191 FQNINHNILNLNSEHGQIVTEKAIDFIN 1218


>UniRef50_Q48UA1 Cluster: Transcriptional activator; n=11;
           Streptococcus pyogenes|Rep: Transcriptional activator -
           Streptococcus pyogenes serotype M28
          Length = 428

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 704 FEEIISNIFLLIALKLVKPRGKLFLNCSVLTYLYCIPLF 588
           F E++SNI    +LKL+K    LFLN  ++ Y+Y  P +
Sbjct: 197 FSELLSNISFQNSLKLLKESFPLFLNGFLIIYIYTQPKY 235


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,860,873
Number of Sequences: 1657284
Number of extensions: 11290838
Number of successful extensions: 23948
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23932
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)