Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30585
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_907| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27)                   28   7.2  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                28   9.5  
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_8927| Best HMM Match : UCH (HMM E-Value=0)                          28   9.5  

>SB_907| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27)
          Length = 681

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 100 DRIRM*CIVNYEYLLESGYLRSSSMYSRSCVITLVPLAYARKVRQ 234
           +RI   C+ NY +L + G +    + S   V+T+ PLA  +  R+
Sbjct: 169 ERILDVCLTNYPFLWKHGSVNKGLVRSDHLVVTVPPLAPVKPSRK 213


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 587  VYTYLYYRFIHTLSDKAFIHLSHTDNFNIFIRANVSVKC 471
            V ++LY   +++L      HL H  +F  F R+ + VKC
Sbjct: 1107 VDSFLYESLLYSLRSAGSQHLWHGKSFKDFSRSLIRVKC 1145


>SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 772

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 683 IFLLIALKLVKPRGKLFLNCSVLTYLYCIPLFVYT 579
           +FL     L++P    FL  + L Y+YC+ L + T
Sbjct: 352 LFLTNVTLLLRPFSPSFLIVAALCYIYCLHLIIVT 386


>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 614 TYLYCIPLFVYTYLYYRFIHTLSDKAFIHLS 522
           TYL CI   +Y+  Y+R  H L    FI LS
Sbjct: 516 TYLRCILSSLYSSTYFRCTHRLIFAVFIGLS 546


>SB_8927| Best HMM Match : UCH (HMM E-Value=0)
          Length = 316

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -2

Query: 175 TSKMIANNPIRVNTRSLQYTTYVFCRFK---NNDARFLCAEHI 56
           T+  I NNP   N+     TT+V   F+    N+ R LC E +
Sbjct: 183 TANCIINNPTTTNSNMRTETTWVHEMFEGTLTNETRCLCCESV 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,424,621
Number of Sequences: 59808
Number of extensions: 359204
Number of successful extensions: 765
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)