Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30585
         (761 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    25   1.9  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   5.9  

>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 30  WLSFFLNHRMCSAHRNLASLFLKRQNTYVVYCKLRVFTRIGLFAIIFDVF*VLCYYFSSV 209
           W+SF++NH   SA   L    +    T     +  +  RI     I D++ V+C+ F   
Sbjct: 241 WVSFWINHEATSARVALGITTVLTMTTISTGVRSSL-PRISYVKAI-DIYLVMCFVFVFA 298

Query: 210 SL 215
           +L
Sbjct: 299 AL 300


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 671  IALKLVKPRGKLFLNCSVLTYLYC 600
            I L+ ++  G  FL  ++ TYLYC
Sbjct: 1680 INLERLETIGDSFLKYAITTYLYC 1703


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 671,973
Number of Sequences: 2352
Number of extensions: 12552
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)