Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30578
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    28   1.4  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    27   3.2  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    27   4.3  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   4.3  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   7.4  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   9.8  

>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -2

Query: 488 CNKIYL*IGLNITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSAL 348
           C +++L  G  I + + L+FYS+      + K ++E+P +H  LSAL
Sbjct: 17  CLRLFL-FGSLILLLRPLIFYSN----TTMKKLKTEYPIYHRHLSAL 58


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
 Frame = +3

Query: 510 SKWFTIISCLHEYLYYHSVKLFILENKTRNFNIVIFNQIYKEILLHL-TILHRH------ 668
           S  F  ++CL   L     KL +L  K    NI+ + + YK+I L +   L ++      
Sbjct: 183 SSAFIYVACLLLRLPLTIHKLEVLIRK----NIIPYYRAYKQIPLKIFKRLQKNYVRMLI 238

Query: 669 PNGLPTLQ*RLTQPVVKLVILLVSKYE 749
           P   PT Q R+   V+ LV +LVSKYE
Sbjct: 239 PFHYPTYQ-RIQSAVLTLVDVLVSKYE 264


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = -2

Query: 437 LVFYSHYMNIQKLPKTESEHPTFHMVLSALLLMYI*KPEARSESGPRPV*QSVGTIRGRA 258
           LVF S    IQ   K  SE+ T  ++LS ++L  +  PE   ++GP  + Q     R   
Sbjct: 126 LVFMSSSSLIQSQQKI-SENVTPALILSGIMLGGVCVPELLKKAGPIAIAQGRKAPRQDP 184

Query: 257 DEA 249
           DE+
Sbjct: 185 DES 187


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 195 RASAPKGGRAALPAAPEIIQNQTRWGERRSPLSVNNAI 82
           R  A + GR AL  +  + +N TR+    +P+SV ++I
Sbjct: 104 RRPAGRRGRPALNTSNSLERNGTRYVSAEAPISVKSSI 141


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 40  ATPWRYPWLMLFG*NSIIY*KWGPSFSPSC-LVLNYLRRCGKSSPSAFGC 186
           A+ W + W M+    + IY  W    +    L+L Y+R   KSS + F C
Sbjct: 189 ASIWAFDWPMMNLQETFIY--WDRCTNACLRLLLCYIRYTNKSSETGFSC 236


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 632 FINLIKYNNIKIPCFILQN 576
           F+  +  N++KIPCFIL +
Sbjct: 307 FVGGVLENHLKIPCFILHS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,763,589
Number of Sequences: 5004
Number of extensions: 82974
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)