Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30573
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)              144   8e-35
SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7)                    69   3e-12
SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_5337| Best HMM Match : ResIII (HMM E-Value=2.4)                     28   6.0  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score =  144 bits (348), Expect = 8e-35
 Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 1/159 (0%)
 Frame = -3

Query: 670 SDLFDNPALMFQHRYSKPFIPIVCFGLPTILPVILWDELLVVAWNLTI-MRYVINFHVFF 494
           SDL+ +  +MFQ R+ K    ++C  +PT++P  LW E L  A+  +  +RYVI  +V +
Sbjct: 108 SDLYADSVVMFQRRHYKKISMLMCVLIPTLVPS-LWGESLWNAYFTSFALRYVITLNVTW 166

Query: 493 LVNSVAHIWGNKPYDKTIKSAENNLVAFATLGEGYHNYHHVFPWDYRCTELGRTWLNYTK 314
            VNS+AH+WG+KPYD TI  AEN  V  AT GEGYHNYHH FP DY  +E G T LN + 
Sbjct: 167 CVNSIAHMWGDKPYDVTINPAENLFVTLATSGEGYHNYHHTFPQDYAASEFG-TRLNMST 225

Query: 313 LFIDLCAKVGLAYDLKVVSDDVILRRVKRTGDRSXFIEN 197
             ID+ A +GL  D KVV  + I +R+ RTG      EN
Sbjct: 226 RLIDMWAAMGLVSDRKVVPKETIRKRMMRTGALRSLGEN 264


>SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7)
          Length = 202

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
 Frame = -3

Query: 607 IVCFGLPTILPVILWDELLVVAWNLTI-MRYVINFHVFFLVNSVAHIWGNKPYDKTIKSA 431
           ++C  +PT++P  LW E L  A+  +  +RYVI  +V + VNS+AH+WG+KPYD TI   
Sbjct: 9   LMCVLIPTLVPS-LWGESLWNAYFTSFALRYVITLNVTWCVNSIAHMWGDKPYDVTINPG 67

Query: 430 ENNLVAFATLGEGYHNYHHVFPWDYRCTELGRTWLNYTKLFIDLCAKVGLAYDLKVVSDD 251
              L     LG            DY  +E G T LN +   ID+ A +GL  D KVV  +
Sbjct: 68  REPL---RYLGN-----------DYAASEFG-TRLNMSTRLIDMWAAMGLVSDRKVVPKE 112

Query: 250 VILRRVK 230
            I   VK
Sbjct: 113 TIRLAVK 119


>SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -3

Query: 478 AHIW-GNKPYDKTIK---SAENNLVAFATLGEGYHNYHHVFPWDYRCTELGRTWLNYTK 314
           AH W    P D  I+      +++ A AT G    N+ +V  +  + +E G TW  YT+
Sbjct: 30  AHAWCAGDPTDCFIEVDLQTVHHVTAVATQGNPSGNHDYVMRYKVQYSEDGETWCYYTQ 88


>SB_5337| Best HMM Match : ResIII (HMM E-Value=2.4)
          Length = 392

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 578 SSNIMG*IVSSRLEPHHHEIRYQLP 504
           S+N MG +V  RL+ HH E  ++LP
Sbjct: 211 STNNMGALVQQRLKEHHRENYHRLP 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,267,878
Number of Sequences: 59808
Number of extensions: 389914
Number of successful extensions: 1099
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)