Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30572
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13070.1 68418.m01498 MSF1-like family protein similar to px1...    91   8e-19
At5g07320.1 68418.m00836 mitochondrial substrate carrier family ...    30   1.5  
At4g22790.1 68417.m03289 MATE efflux family protein contains Pfa...    29   3.5  
At5g25840.1 68418.m03066 expressed protein                             28   6.2  

>At5g13070.1 68418.m01498 MSF1-like family protein similar to px19
           [Gallus gallus] GI:969170; contains Pfam profile
           PF04707: MSF1-like conserved region
          Length = 183

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 11/170 (6%)
 Frame = +3

Query: 120 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIG----TDVVERKV--VDGVLHTHRLV 281
           +K +  EH + HPWE V+ A+WRK+ +P N  ++      D + RK+    G LHT R +
Sbjct: 2   VKAYRQEHVYKHPWERVSAASWRKFADPENKRILSHILEVDTLNRKLDTETGKLHTTRAL 61

Query: 282 SSKWFFPRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHP 461
           +     P +   +IG   IC+  E + V+   R M L T N++   +I V+E +RY PHP
Sbjct: 62  TIHAPGPWFLHRIIG-QDICHCVESTVVDGKSRSMQLTTKNISLKKFIEVEERIRYDPHP 120

Query: 462 SD-SSKTLLKQEAVVTVQGV----PLSSYMEDLLTNKISLNAGKGRQAIE 596
            + S+ T+  QE  + ++ +     ++  +E     K   N+ KGR+ +E
Sbjct: 121 DNPSAWTVCSQETSIRIKPLSALASMAEKVEQKCAEKFMQNSAKGREVME 170


>At5g07320.1 68418.m00836 mitochondrial substrate carrier family
           protein similar to peroxisomal Ca-dependent solute
           carrier [Oryctolagus cuniculus] GI:2352427
           (mitochondrial carrier superfamily); contains
           INTERPRO:IPR001993 Mitochondrial substrate carrier
           family, INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 479

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 462 SDSSKTLLKQEAVVTVQGVPLSSYMEDLLTNKISL 566
           +DSSKT +KQE + T++G  L  +   LL N + +
Sbjct: 424 ADSSKTTMKQEFMNTMKGEGLRGFYRGLLPNLLKV 458


>At4g22790.1 68417.m03289 MATE efflux family protein contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 491

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 212 WIHRIRIFSPCCLSNCFPW 156
           W+  I++  PCCL+ C  W
Sbjct: 253 WLTLIKLSGPCCLTVCLEW 271


>At5g25840.1 68418.m03066 expressed protein
          Length = 173

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 390 LKTTNLTFCHYIAVDETVRYTPHPSDSSKTLLKQEAVVTVQ 512
           L+ T     H I++D T+   P P+ ++ TLL   A+  V+
Sbjct: 4   LQRTISDISHQISIDNTLTKEPSPTATATTLLSLSAISEVE 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,123,318
Number of Sequences: 28952
Number of extensions: 295792
Number of successful extensions: 723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)