Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30566
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 50   2e-06
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           47   2e-05
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              43   4e-04
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              40   0.003
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.010
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    36   0.056
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     35   0.074
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              34   0.17 
SB_8818| Best HMM Match : I-set (HMM E-Value=0)                        31   0.91 
SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14)        31   1.2  
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                30   2.8  
SB_25250| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 23/50 (46%), Positives = 33/50 (66%)
 Frame = +2

Query: 398 IDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGXADYIKNMITGTGQM 547
           +D    E+ RGITI++A  +++T + +    D PG  D+IKNMITGT QM
Sbjct: 12  LDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQM 61


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = +2

Query: 398 IDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXAT 577
           +D   EE+ +G T+ V    + T+ +H+   D PG   ++ NMI+G  Q D  +L   A 
Sbjct: 197 LDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISAR 256

Query: 578 DG 583
            G
Sbjct: 257 KG 258


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
 Frame = +2

Query: 290 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQT- 466
           N+G +GHVD GKT+L  A++   S          A  D  P+ + RGIT+++    +Q  
Sbjct: 37  NIGVLGHVDSGKTSLAKALSTTAST---------ASFDKNPQSQERGITLDLGFSSFQVA 87

Query: 467 ---EQRHYGH---------TDCPGXADYIKNMITG 535
                R  G           DCPG A  IK +I G
Sbjct: 88  LPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG 122


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +2

Query: 437 INVAHVEYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
           ++V    +QT+ +     D PG  D+I NMITG  Q D AIL   A  G
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITG 49


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 290  NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINV-AHVEYQT 466
            N   + HVDHGK+TL   + +V   ++ +       +D    E+ RGIT+    HV++  
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNKQV-LDKLQVERERGITVKAQGHVDFSY 2001

Query: 467  E 469
            E
Sbjct: 2002 E 2002


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 35.5 bits (78), Expect = 0.056
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
 Frame = +2

Query: 290 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVE--YQ 463
           N+  I HVDHGK+TLT ++      +  A+       D   +E+ R ITI    +   Y+
Sbjct: 20  NMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKSTAISLYYE 79

Query: 464 TEQRHYGH---TDCPGXADYIKNMITGTGQMD 550
             +  + +      P    ++ N+I   G +D
Sbjct: 80  LPESDFEYITQPKDPKERGFLINLIDSPGHVD 111


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
 Frame = +2

Query: 296 GTIGHVDHGKTTLT-------AAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHV 454
           G I H D GKTTLT        AI +  +  +   KKG A  D    E+ RGI++  + +
Sbjct: 14  GIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSNKIKKG-ATSDFMEIERQRGISVATSVL 72

Query: 455 EYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDGGNATNTRTFATCQ 622
            +    +     D PG  D+ ++       +D  I+      G      +    C+
Sbjct: 73  AFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKGVEEQTEKLVEVCR 128


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 28/88 (31%), Positives = 38/88 (43%)
 Frame = +2

Query: 299 TIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQRH 478
           TIGHV HGK+T    + K LS +   + K          E  R ITI + +   +     
Sbjct: 27  TIGHVAHGKST----VVKALSGVQTVRFKN---------ELERNITIKLGYANAKV---- 69

Query: 479 YGHTDCPGXADYIKNMITGTGQMDGAIL 562
               DCPG    +  M+ G   MD A+L
Sbjct: 70  ----DCPGHDILMATMLNGAAVMDAALL 93


>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2787

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 11/24 (45%), Positives = 20/24 (83%)
 Frame = +1

Query: 151  CEISSEAKPVCKCTKHNSPVRIDS 222
            C++S+EAKP  + +++ SPVR+D+
Sbjct: 1953 CKLSAEAKPTFEWSRNGSPVRLDN 1976


>SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14)
          Length = 239

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 6/160 (3%)
 Frame = +2

Query: 92  LKSSFNMASITFVKSLVSPAVKLVLKQSQCANVRNTTVLSGLTPLSIILKRHYAEKQIFE 271
           L   F+ A +   +S+++P ++       C  +          PL++     Y ++ +  
Sbjct: 72  LSGQFSKAFVALFQSVMTPTLR-------CTPLITCLSSDARLPLAMSHTGKYTDQPLMT 124

Query: 272 RTK--PHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPE-EKARGITIN 442
                PH N G +G V +G     +A  K+L          YA   NAP  +   G+   
Sbjct: 125 PASNDPHWNCGEMGDVQNGVCAQGSA-KKIL----------YAWAGNAPSLDLPEGVAFK 173

Query: 443 VAH---VEYQTEQRHYGHTDCPGXADYIKNMITGTGQMDG 553
           V     V+Y   Q HYGH D      + + ++TG  + +G
Sbjct: 174 VGQDSDVKYLVLQVHYGHVD-----KFFRTVMTGYRERNG 208


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 272 RTKPHCNVGTI-GHVDHGKTTLTAAI 346
           R  P   V TI GHVDHGKTTL  A+
Sbjct: 23  RLMPRPPVVTIMGHVDHGKTTLLDAL 48


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 272 RTKPHCNVGTIGHVDHGKTTLT 337
           + K H N+  IGHVD GK+T T
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTT 24


>SB_25250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 347 TKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 469
           T +L D +  +K  Y  +D++  EKA GI ++ +H E  T+
Sbjct: 97  TYILLDDSHGEKTAYILLDDSHAEKATGILLDDSHAEKATD 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,140,715
Number of Sequences: 59808
Number of extensions: 424470
Number of successful extensions: 835
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)