Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30565
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10590| Best HMM Match : DUF485 (HMM E-Value=7.3)                    29   1.4  
SB_18509| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_38458| Best HMM Match : MerC (HMM E-Value=5)                        27   7.4  

>SB_10590| Best HMM Match : DUF485 (HMM E-Value=7.3)
          Length = 270

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 359 FLPRNINRLWRCPTKIKLIFSLNGKKVL*SNIIPTHTLNVKTSRTSTCL 213
           FL   +N  WRCP  +++IF L     L +   P  T N   S+T+T +
Sbjct: 48  FLMAELNVSWRCPGALRVIF-LRSLTFLMTQ-YPATTANTTRSKTATVM 94


>SB_18509| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 239 KTSRTSTCLVLSCFKTHFVFIYQEHLLYFIL 147
           K SRT   +V+  F +H V+I     LYFI+
Sbjct: 153 KVSRTMYLIVIILFASHTVYILITPALYFIV 183


>SB_38458| Best HMM Match : MerC (HMM E-Value=5)
          Length = 110

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 239 KTSRTSTCLVLSCFKTHFVFIYQEHLLYFIL 147
           K SRT   +V+  F +H V+I     LYFI+
Sbjct: 47  KVSRTMYLIVIILFASHTVYILITPALYFIV 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,951,528
Number of Sequences: 59808
Number of extensions: 268050
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)