Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30565
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22355.1 68418.m02608 DC1 domain-containing protein contains ...    27   7.9  
At2g42850.1 68415.m05306 cytochrome P450 family protein similar ...    27   7.9  

>At5g22355.1 68418.m02608 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain; similar to ULI3 [Arabidopsis
           thaliana] GI:17225050
          Length = 664

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 260 PTHTLNVKTSRTSTCLVLSCFKTHFVFIYQ 171
           P HTL +  S  + C    C KT F F Y+
Sbjct: 69  PQHTLKLHNSLRNPCKCNLCGKTFFAFGYR 98


>At2g42850.1 68415.m05306 cytochrome P450 family protein similar to
           taxane 13-alpha-hydroxylase (GI:17148242) {Taxus
           cuspidata}
          Length = 485

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 139 KDIILQEEKNYNNVLFIKIYHFIHTRATKMTYRILPIHLRC 17
           K +I +EE   N VL +   H   + A  MT+++L  H  C
Sbjct: 278 KGVITEEEVVDNMVLLVFAAHDTTSYAMSMTFKMLAQHPTC 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,502,729
Number of Sequences: 28952
Number of extensions: 176693
Number of successful extensions: 370
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)