Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30564
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containi...    30   1.7  
At4g38750.1 68417.m05488 expressed protein                             28   6.8  

>At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1280

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +2

Query: 344 LIMLLGLYKDIKKRSNLTPDAGISDASTCLHKMESKSSR 460
           L M L LY +IK RS + PD GI     C    ES+ SR
Sbjct: 334 LEMALSLYLEIK-RSGIPPDRGILGKLLCSFSEESELSR 371


>At4g38750.1 68417.m05488 expressed protein 
          Length = 1073

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 272 LGFVSNINISMICLNRLQFKVLFGLIMLLGLYKD-IKKRSNLTP 400
           L ++   N SM+ L+  Q  VL  LI +L LY+D I    N TP
Sbjct: 418 LNYMQRAN-SMVLLSTSQLSVLHALISVLILYEDNISVHLNATP 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,033
Number of Sequences: 28952
Number of extensions: 275381
Number of successful extensions: 530
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)