Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30562
         (383 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023)         33   0.060
SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023)          33   0.060
SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.7  
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_7919| Best HMM Match : Herpes_UL1 (HMM E-Value=2.9)                 28   3.0  
SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)                   28   3.0  
SB_10007| Best HMM Match : PAN (HMM E-Value=0.25)                      27   5.2  
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)                       27   5.2  
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)        27   6.9  
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)                      26   9.2  
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)           26   9.2  
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)                 26   9.2  
SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_43805| Best HMM Match : YscO (HMM E-Value=6)                        26   9.2  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_24478| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
          Length = 186

 Score = 33.5 bits (73), Expect = 0.060
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 35  RYGESDPRNPTASSC*KTRCGESQRGKVSEKRNA*SRPRRRLKMKLKSTDRSVK 196
           R G+   R  +     K    +S++ K S+KRNA  RPR   K K ++  R VK
Sbjct: 112 RKGKRSVRKSSVKKLTKKSKSKSRKSKASKKRNARRRPRSARKTKSRAPARRVK 165


>SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
          Length = 186

 Score = 33.5 bits (73), Expect = 0.060
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 35  RYGESDPRNPTASSC*KTRCGESQRGKVSEKRNA*SRPRRRLKMKLKSTDRSVK 196
           R G+   R  +     K    +S++ K S+KRNA  RPR   K K ++  R VK
Sbjct: 112 RKGKRSVRKSSVKKLTKKSKSKSRKSKASKKRNARRRPRSARKTKSRAPARRVK 165


>SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 193 HAPVCTFQLHLEPPPW 146
           HAP+CT ++ L  PPW
Sbjct: 201 HAPLCTKRVRLSKPPW 216


>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 194 KGSSKNLKPSTWVPGKVLRXRSMPR 268
           + +SKNL P  W PG VL+   + R
Sbjct: 661 RDTSKNLDPKRWGPGPVLKAEEVDR 685


>SB_7919| Best HMM Match : Herpes_UL1 (HMM E-Value=2.9)
          Length = 262

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 122 RLPCLADFLRSAFFSS*KLLDSLGLTRHIE 33
           R PC +D  R +FF S K  DSL  T+ +E
Sbjct: 24  RYPCFSDINRKSFFYS-KTTDSLTTTKGLE 52


>SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)
          Length = 728

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 16  HSFCVFSIWRVRPKESNSF-*LLKNALRRKSARQGKRK 126
           H  C+  +W +  K S++F   LK+  RR+SA+   RK
Sbjct: 634 HLRCLLKMWTLEKKTSSTFINALKHRRRRRSAKNKYRK 671


>SB_10007| Best HMM Match : PAN (HMM E-Value=0.25)
          Length = 134

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 19  SFCVFSIWRVRPKESNSF*LLKNALRRKSARQGKRKAKRL 138
           +FCVF    VR    N F + +N + R+SA+   R  K +
Sbjct: 6   AFCVFITVTVRLASGNQF-VARNTMERRSAKSAGRFRKHV 44


>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
          Length = 259

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 88  ALRRKSARQGKRKAKRLKQAKEEAQ 162
           AL+RK ++QGK+  K+LK   ++ Q
Sbjct: 213 ALKRKVSKQGKKFNKKLKGVSQQVQ 237


>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
          Length = 979

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 24  LCVFDMASQTQGIQQLLAAEKRAAEKVSEAR*AKSETPKAGQGGGS 161
           LC  D    ++  +   A+E   A + SEA  A SE  +AG+ GG+
Sbjct: 393 LCAVDTGVASKASEASEASEAGGASEASEAGGA-SEASEAGEAGGA 437


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 259 DAETKVKIEEMNKMVQTQKEAVIKD 333
           DA  K+KIEE  K+ Q  K AV  D
Sbjct: 736 DATFKIKIEEKRKLYQISKAAVDGD 760


>SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 17/81 (20%), Positives = 33/81 (40%)
 Frame = +1

Query: 82  KNALRRKSARQGKRKAKRLKQAKEEAQDEVXXXXXXXXXXXXXXXAKHMGTREGVAXKID 261
           K   ++K  ++ K+K K+ K+ KEE ++E                 +    R     K  
Sbjct: 7   KKKQKKKKKKRKKKKQKKQKKKKEEEEEEEEENEEEERRRKRRRRRRRRRRRRKKEKKKK 66

Query: 262 AETKVKIEEMNKMVQTQKEAV 324
            E + + EE  + V  ++E +
Sbjct: 67  EEEEEEEEEETEAVNEEEEKI 87


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 87   VFQQLEAVGFLGSDSPYRKHTKTM*TKTE 1
            V +++  + F+ + +PYRKHT  M  K E
Sbjct: 2465 VGEEIRRLHFIAACNPYRKHTDQMIHKLE 2493


>SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)
          Length = 315

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +1

Query: 223 HMGTREGVAXKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDXKPELHINY 381
           H   ++  A K + E K ++IE +NK ++  KE +  D L+  + Y  + E + N+
Sbjct: 136 HQMKKKAKAAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNF 191


>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
          Length = 1118

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 146 PRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRXRSMP 265
           PRR   M  KSTD+     +K    ST + G  +R R  P
Sbjct: 474 PRRLRDMSTKSTDKLKASPTKLRNKSTRMRGGPVRPRDSP 513


>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
          Length = 1266

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 170 LKSTDRSVKGSSKNLKPSTWVPGKVLRXRSMPR 268
           LK+  +++    KNL    W+PG+  R    PR
Sbjct: 758 LKNLPKNLANGIKNLHVRLWLPGRQRRANHEPR 790


>SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 82  KNALRRKSARQGKRKAKRLKQAKEEAQDE 168
           K   ++K  ++ K+K K+ K+ KEE ++E
Sbjct: 168 KKKKKKKKKKKKKKKKKKKKKKKEEEEEE 196


>SB_43805| Best HMM Match : YscO (HMM E-Value=6)
          Length = 243

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +1

Query: 223 HMGTREGVAXKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDXKPELHINY 381
           H   ++  A K + E K ++IE +NK ++  KE +  D L+  + Y  + E + N+
Sbjct: 136 HQMKKKAKAAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNF 191


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 44   ESDPRNPTASSC*KTRCGESQRGKVSEKRNA*SRPRRRLKMKLKS 178
            ESD +  +  +  K    + +R K+ E+RN   + R+R K K K+
Sbjct: 961  ESDKQEESKENEGKEMTRKEKRKKIKEERNRRKKERKREKRKKKA 1005


>SB_24478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 747

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 90  RVFQQLEAVGFLGSDSPYRK 31
           R+F+QL  +G+L  +SP +K
Sbjct: 231 RIFEQLRKIGYLTQESPEQK 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,340,797
Number of Sequences: 59808
Number of extensions: 166545
Number of successful extensions: 584
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)