Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30562
(383 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23710.1 68417.m03412 vacuolar ATP synthase subunit G 2 (VATG... 33 0.086
At3g01390.2 68416.m00062 vacuolar ATP synthase subunit G 1 (VATG... 33 0.086
At3g01390.1 68416.m00061 vacuolar ATP synthase subunit G 1 (VATG... 33 0.086
At4g25950.1 68417.m03733 vacuolar ATP synthase, putative / V-ATP... 28 1.9
At4g04390.1 68417.m00627 Ulp1 protease family protein contains P... 28 1.9
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 27 4.3
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ... 27 4.3
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f... 27 5.7
At2g37080.1 68415.m04550 myosin heavy chain-related low similari... 26 7.5
At1g30490.1 68414.m03727 homeobox-leucine zipper transcription f... 26 7.5
At5g47150.1 68418.m05812 YDG/SRA domain-containing protein low s... 26 9.9
At5g28400.1 68418.m03448 expressed protein 26 9.9
At5g07630.1 68418.m00874 nuclear division RFT family protein low... 26 9.9
At4g21900.1 68417.m03166 MATE efflux family protein similar to r... 26 9.9
At3g43300.1 68416.m04570 guanine nucleotide exchange family prot... 26 9.9
At3g05070.1 68416.m00550 expressed protein 26 9.9
At2g40660.1 68415.m05017 tRNA-binding region domain-containing p... 26 9.9
At1g47240.1 68414.m05230 NRAMP metal ion transporter 2, putative... 26 9.9
At1g30370.1 68414.m03713 lipase class 3 family protein similar t... 26 9.9
At1g01960.1 68414.m00114 guanine nucleotide exchange family prot... 26 9.9
>At4g23710.1 68417.m03412 vacuolar ATP synthase subunit G 2 (VATG2)
/ V-ATPase G subunit 2 (VAG2) / vacuolar proton pump G
subunit 2 identical to Swiss-Prot:O82629 vacuolar ATP
synthase subunit G 2 (V-ATPase G subunit 2, Vacuolar
proton pump G subunit 2) [Arabidopsis thaliana]
Length = 106
Score = 32.7 bits (71), Expect = 0.086
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 124 KAKRLKQAKEEAQDEVXXXXXXXXXXXXXXXAKHMGTREGVAXKIDAETKVKIEEM-NKM 300
K RLKQAKEEA+ EV G +++ ET KIE++ N+
Sbjct: 27 KMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATSGDSGANVKRLEQETDAKIEQLKNEA 86
Query: 301 VQTQKEAV 324
+ K+ V
Sbjct: 87 TRISKDVV 94
Score = 30.3 bits (65), Expect = 0.46
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3
Query: 48 QTQGIQQLLAAEKRAAEKVSEAR*AK 125
++ GIQQLLAAE+ A + V+ AR AK
Sbjct: 2 ESAGIQQLLAAEREAQQIVNAARTAK 27
>At3g01390.2 68416.m00062 vacuolar ATP synthase subunit G 1 (VATG1)
/ V-ATPase G subunit 1 (VAG1) / vacuolar proton pump G
subunit 1 (VMA10) identical to SWISS-PROT:O82628
vacuolar ATP synthase subunit G 1 (V-ATPase G subunit 1,
Vacuolar proton pump G subunit 1) [Arabidopsis thaliana]
Length = 110
Score = 32.7 bits (71), Expect = 0.086
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = +1
Query: 124 KAKRLKQAKEEAQDEVXXXXXXXXXXXXXXXAKHMGTREGVAXKIDAETKVKIEEMNKMV 303
K RLKQAKEEA+ E+ + G +++ ET KIE++
Sbjct: 31 KMARLKQAKEEAEKEIAEYKAQTEQDFQRKLEETSGDSGANVKRLEQETDTKIEQLKNEA 90
Query: 304 QTQKEAVIKDVLNLVYDXK 360
+ V++ +L V K
Sbjct: 91 SRISKDVVEMLLKHVTTVK 109
>At3g01390.1 68416.m00061 vacuolar ATP synthase subunit G 1 (VATG1)
/ V-ATPase G subunit 1 (VAG1) / vacuolar proton pump G
subunit 1 (VMA10) identical to SWISS-PROT:O82628
vacuolar ATP synthase subunit G 1 (V-ATPase G subunit 1,
Vacuolar proton pump G subunit 1) [Arabidopsis thaliana]
Length = 110
Score = 32.7 bits (71), Expect = 0.086
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = +1
Query: 124 KAKRLKQAKEEAQDEVXXXXXXXXXXXXXXXAKHMGTREGVAXKIDAETKVKIEEMNKMV 303
K RLKQAKEEA+ E+ + G +++ ET KIE++
Sbjct: 31 KMARLKQAKEEAEKEIAEYKAQTEQDFQRKLEETSGDSGANVKRLEQETDTKIEQLKNEA 90
Query: 304 QTQKEAVIKDVLNLVYDXK 360
+ V++ +L V K
Sbjct: 91 SRISKDVVEMLLKHVTTVK 109
>At4g25950.1 68417.m03733 vacuolar ATP synthase, putative /
V-ATPase, putative / vacuolar proton pump, putative
similar to Swiss-Prot:O82629 vacuolar ATP synthase
subunit G 2 (V-ATPase G subunit 2, Vacuolar proton pump
G subunit 2) [Arabidopsis thaliana]
Length = 108
Score = 28.3 bits (60), Expect = 1.9
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +1
Query: 124 KAKRLKQAKEEAQDEVXXXXXXXXXXXXXXXAKHMGT-REGVAXKIDAETKVKIEEMNKM 300
K R+KQAK+EA+ E+ + GT +E A ++D ET V+I + +
Sbjct: 31 KLARMKQAKDEAEKEMEEYRSRLEEEYQTQVS---GTDQEADAKRLDDETDVRITNLKES 87
Query: 301 VQTQKEAVIKDVLNLV 348
+ ++K ++ V
Sbjct: 88 SSKVSKDIVKMLIKYV 103
>At4g04390.1 68417.m00627 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 963
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 25 CVFSIWRVRPKESNSF*LLKNALRRKSARQG--KRKAKRLKQAKEEAQDE 168
CV S V PK+ +LK RKSA+QG K+ + +++ ++ + DE
Sbjct: 340 CVPSEVVVAPKKRKKSAMLKGGRGRKSAKQGRFKKNSTGIRRTQQNSIDE 389
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 27.1 bits (57), Expect = 4.3
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +1
Query: 37 IWRVRPKESNSF*LLKNALRRKSARQGKRKAKRLKQAKEEAQDEVXXXXXXXXXXXXXXX 216
I+R + + +N N L+ S + K++A L + + + DE
Sbjct: 316 IFREKERLTNELEAKMNNLKIWSKQLDKKQA--LTELERQKLDEDKKKSDVMNSSLQLAS 373
Query: 217 AKHMGTREGVAXKIDAETKVKIEEMNKMVQTQKEAVIKDVLNL-VYDXKPELHI 375
+ T + V +D + K E +NK++Q +KE K L + + + K +L +
Sbjct: 374 LEQKKTDDRVLRLVDEHKRKKEETLNKILQLEKELDSKQKLQMEIQELKGKLKV 427
>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1116
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 122 EKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRXRSMPRP 271
++RN RLK LK + K + STW +L+ SMP P
Sbjct: 730 DRRNLTEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLLQLGSMPSP 779
>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
factor (HB-14) identical to homeodomain transcription
factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
thaliana];
Length = 852
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +1
Query: 277 KIEEMNKMVQTQKEAVIKDVLNLVYD---XKPELH 372
K+ MNK++ + + + K V NLVY+ K +LH
Sbjct: 96 KLNAMNKLLMEENDRLQKQVSNLVYENGHMKHQLH 130
>At2g37080.1 68415.m04550 myosin heavy chain-related low similarity
to myosin heavy chain [Rana catesbeiana] GI:4249701
Length = 583
Score = 26.2 bits (55), Expect = 7.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 113 KVSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRXRSMPR 268
+V +K++ S P+ K+K +D ++K P T P KV+ R PR
Sbjct: 12 EVPQKKSPASTPKTARKLKTSESDPVSSPNTKIRTPKTQSP-KVVADRRSPR 62
>At1g30490.1 68414.m03727 homeobox-leucine zipper transcription
factor (HB-9) identical to HD-Zip protein GB:CAA71854
GI:2145358 from [Arabidopsis thaliana]
Length = 841
Score = 26.2 bits (55), Expect = 7.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 277 KIEEMNKMVQTQKEAVIKDVLNLVYD 354
K+ MNK++ + + + K V NLVY+
Sbjct: 92 KLSAMNKLLMEENDRLQKQVSNLVYE 117
>At5g47150.1 68418.m05812 YDG/SRA domain-containing protein low
similarity to nuclear protein np95 [Mus musculus]
GI:4220590; contains Pfam profile PF02182: YDG/SRA
domain
Length = 328
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 253 KIDAETKVKIEEMNKMVQTQKEAVIKDVLNL--VYDXKPELHI 375
+ID +T +E+M K V T+K +N+ V+ K EL +
Sbjct: 153 RIDLKTLTVLEKMGKQVNTEKRIGSVPGINIGDVFQYKTELRV 195
>At5g28400.1 68418.m03448 expressed protein
Length = 996
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 98 ESQRGKVSE-KRNA*SRPRRRLKMKLKSTDRSVKGSSKN 211
+ +RG + K + S+P++ KL T +VKGSS N
Sbjct: 511 DEERGVARKHKLDVDSQPQKNDYQKLSETGNAVKGSSSN 549
>At5g07630.1 68418.m00874 nuclear division RFT family protein low
similarity to SP|P38206 Nuclear division RFT1 protein
{Saccharomyces cerevisiae}; contains Pfam profile
PF04506: Rft protein
Length = 401
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 329 LMTASFCVWTILFISSILTLVS 264
L+ A+ W IL +SSI+TL+S
Sbjct: 327 LIMANSLSWQILILSSIITLIS 348
>At4g21900.1 68417.m03166 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
MatE
Length = 1094
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 323 TASFCVWTILFISSILTLVSASILXAT 243
+A F WT F+S ++++V A ++ A+
Sbjct: 263 SALFSTWTATFVSFVISVVEALVVIAS 289
>At3g43300.1 68416.m04570 guanine nucleotide exchange family protein
similar to SP|Q9Y6D5 Brefeldin A-inhibited guanine
nucleotide-exchange protein 2 {Homo sapiens}; contains
Pfam profile PF01369: Sec7 domain
Length = 1756
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 321 RLLLCLDHFVHLFDLNFGLGIDLXRNTFPGTHVLGFKFFELP 196
R+LLC++ F + + LG+D R F T ++ F F P
Sbjct: 880 RILLCMEGFKAGIHIAYVLGMDTMRYAFL-TSLVRFTFLHAP 920
>At3g05070.1 68416.m00550 expressed protein
Length = 144
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 82 KNALRRKSARQGKRKAKRLKQAKEEAQDE 168
+ A RK A + R A+ L + KE+ +DE
Sbjct: 10 QKAAARKEALKALRAAQELSETKEDGEDE 38
>At2g40660.1 68415.m05017 tRNA-binding region domain-containing
protein similar to SP|Q12904 Multisynthetase complex
auxiliary component p43 [Contains: Endothelial-monocyte
activating polypeptide II (EMAP-II) (Small inducible
cytokine subfamily E member 1)] {Homo sapiens}; contains
Pfam profile PF01588: Putative tRNA binding domain
Length = 389
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 82 KNALRRKSARQGKRKAKRLKQAKEEAQ 162
KNA + K A++ K+K + AK+EA+
Sbjct: 200 KNAAKEKDAKKEKKKPAEPEPAKKEAE 226
>At1g47240.1 68414.m05230 NRAMP metal ion transporter 2, putative
(NRAMP2) similar to metal transporter Nramp3
[Arabidopsis thaliana] gi|6468012|gb|AAF13278; member of
the natural resistance-associated macrophage protein
(NRAMP) metal transporter family, PMID:11500563
Length = 530
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 329 LMTASFCVWTILFISSILTLVSASILXATP 240
L + CVWT +I+ I+ L+S S +P
Sbjct: 484 LFGVTVCVWTTAYIAFIVYLISHSNFFPSP 513
>At1g30370.1 68414.m03713 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile: PF01764: Lipase
Length = 529
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 110 LADFLRSAFFSS*KLLDSLGLTRH 39
L++F S+ ++ KL + LGLTRH
Sbjct: 161 LSEFCGSSRYNRNKLFEELGLTRH 184
>At1g01960.1 68414.m00114 guanine nucleotide exchange family protein
similar to guanine nucleotide exchange factor [Homo
sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
domain
Length = 1750
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 354 VIHQIQDVFDD-RLLLCLDHFVHLFDLNFGLG 262
VI + D++D R+ L +H + LFD G+G
Sbjct: 1551 VIQAVTDIYDMYRMSLTANHMLMLFDAMHGIG 1582
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,331,892
Number of Sequences: 28952
Number of extensions: 113936
Number of successful extensions: 394
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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