Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30552
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR cla...    28   2.1  
At1g15540.1 68414.m01869 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   2.1  
At3g53170.1 68416.m05859 pentatricopeptide (PPR) repeat-containi...    27   4.9  
At3g47870.1 68416.m05218 LOB domain family protein / lateral org...    26   8.6  
At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138...    26   8.6  

>At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1054

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 275 AQGQHILTSTNSQKNTDLWTATMLSTIFQKIDHHRWALFLNLV 403
           AQG  IL +T SQ+   +  A  +  +    D   W+LF+  V
Sbjct: 305 AQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCWSLFMKTV 347


>At1g15540.1 68414.m01869 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to GS-AOP loci [GI:16118889,
           GI:16118887, GI:16118891, GI:16118893]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 320

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 293 LTSTNSQKNTDLWTATMLSTIFQKIDHHRW 382
           L+  N ++NT+LW+ T   ++ + ++HH W
Sbjct: 14  LSDKNLKQNTELWSFTR-DSVREAMEHHGW 42


>At3g53170.1 68416.m05859 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 447

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 272 DAQGQHILTSTNSQKNTDLWTATMLSTIFQKIDHHRWALFLNL 400
           DA  + I    NS+K   LW   +L  + + I  +RW   L +
Sbjct: 38  DAAVKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKI 80


>At3g47870.1 68416.m05218 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD27) identical to
           SP|Q9STS6 Putative LOB domain protein 27 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana
          Length = 328

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 224 SCQTHH*NQFSPSAGNDAQGQHILTSTNS 310
           SC   + N +SP A N   G+ ILT+ N+
Sbjct: 217 SCSEVNNNGYSPPAYNTDSGKEILTNNNN 245


>At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;  previously annotated as
           'auxin-independent growth promoter protein -related'
           based on similarity to axi 1 protein (GB:X80301)
           (GI:559920) from [Nicotiana tabacum], which, due to
           scienitific fraud was retracted. Retraction in: Schell
           J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.
          Length = 656

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 393 RNKAHR**SIFWNXVDSIVAVHKSVFF 313
           RN+AHR   + W+ +D  V+V   VFF
Sbjct: 456 RNQAHR---LLWDALDFAVSVEADVFF 479


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,899,462
Number of Sequences: 28952
Number of extensions: 139093
Number of successful extensions: 288
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)