Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30551
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)             232   1e-61
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.18 
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.98 
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     30   1.7  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069)                   29   4.0  
SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     27   9.1  
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)          27   9.1  

>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score =  232 bits (568), Expect = 1e-61
 Identities = 119/149 (79%), Positives = 131/149 (87%)
 Frame = +3

Query: 87  NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 266
           + P Y  FFGVMGA +A++FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII
Sbjct: 5   DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64

Query: 267 AIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDASVRGTAQ 446
           AIYGLVVAVLI  ++ +  +Y LYK F+ LGAGL+V  SGLAAGFAI IVGDA VRGTAQ
Sbjct: 65  AIYGLVVAVLIGSSISK--DYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQ 122

Query: 447 QPKLFVGMILILIFAEVLGLYGLIVAIYL 533
           QP+LFVGMILILIFAEVLGLYGLIVA+ L
Sbjct: 123 QPRLFVGMILILIFAEVLGLYGLIVALIL 151


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 570  REWCVF---RAFILCTGRWRR*VRKDPILQRK*E*ESFRRIT*AVEQYHARLHLP 415
            R WCV+   R+ I CT RW R V   P  + +   +S RR+    E   + L+ P
Sbjct: 931  RGWCVYHMGRSLIACTRRWMRKVACSPSKETRPHRQSSRRLASQQESQQSLLNAP 985


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
 Frame = +2

Query: 239  HSCRHGGYYCHLRSGRGCPDCWCPPGASQLPPLQRV-------HPLGCWFGCKILWSGCR 397
            + CR+ G  C +   R  P C CPPG       QRV       +P  C         G  
Sbjct: 2981 YKCRYQGEVC-VTDSRNVPRCVCPPGCPPAEVSQRVCASDGLTYPSVCEMHRTACSLGIS 3039

Query: 398  FRHKHRGRCK 427
             + K+RG C+
Sbjct: 3040 IQAKYRGSCR 3049


>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 404 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 273
           G+   +T  SYS  S+QV +PF    V        +QD H+QT+
Sbjct: 713 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQPIKQHQDKHNQTL 756



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 404 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 273
           G+   +T  SYS  S+QV +PF    V        +QD H+QT+
Sbjct: 44  GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQLIKQHQDKHNQTL 87


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = -1

Query: 438 YHARLHLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPGGHQQSGQ--PRPDRRW 268
           YHA+  + +C    ++P   +L   Q  S    C       PGGHQ   Q   R   RW
Sbjct: 264 YHAKNQVVKCYQPGKEPGGHLLPTYQAKSQAVKCYYIPGKEPGGHQAKNQAVTRQRTRW 322


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 423  HLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPG-GHQQSGQ 289
            ++   +++  Q +Q +L  NQ PS  T+  GGS    G GH   GQ
Sbjct: 2347 YVSHTVFKREQDEQLLLWLNQRPSDWTMTWGGSGTIYGWGHNHRGQ 2392


>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 239 HSCRHGGYYCHLRSGRGCPDCW 304
           +SC  G YYC++   RG  DCW
Sbjct: 348 YSCNSGHYYCYV---RGSNDCW 366


>SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 602 IMSIEARSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSENKNKN 471
           + ++  +STGD S VC G +F    D   K +  Q   E K  N
Sbjct: 15  LSALNKKSTGDKSWVCFGNMFMKLPDSKTKDMIIQGLQEVKGFN 58


>SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069)
          Length = 466

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/28 (60%), Positives = 18/28 (64%)
 Frame = +1

Query: 91  IQSTDPSLELWGRRLLSSSAPWELPMEL 174
           I S D  LELWG R LS+SA   LP EL
Sbjct: 355 ILSGDFYLELWGARELSNSALNFLPAEL 382


>SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1404

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/56 (28%), Positives = 33/56 (58%)
 Frame = +3

Query: 144 FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL 311
           +S + A  G   +  G+  ++V+   + +  +I  V+  IIA+ G++VAV++A A+
Sbjct: 786 YSVIVAVVGVIIAVVGVI-IAVVGVIIAVVGVIIAVVGVIIAVVGVIVAVVVATAV 840


>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 433 RTLASPTMLMAKPAARPENLTAKPAPKWMNPL*R 332
           RTL+SP +L A    +P   T  P P  M PL R
Sbjct: 290 RTLSSPVLLTAPAKVQPS--TPTPTPTCMTPLNR 321


>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
          Length = 497

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 299 NQDSHDQTVDGNNTRHDDRNDRLHDQL 219
           N D+ D   D NN   DD ND  +D +
Sbjct: 140 NDDNDDNNNDSNNNSDDDGNDDTNDYI 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,221,799
Number of Sequences: 59808
Number of extensions: 491351
Number of successful extensions: 1516
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)