Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30549
         (463 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07430.1 68416.m00886 YGGT family protein contains Pfam profi...    30   0.66 
At5g41505.1 68418.m05040 hypothetical protein                          29   1.2  
At2g25970.1 68415.m03117 KH domain-containing protein                  28   2.7  
At5g56890.1 68418.m07099 protein kinase family protein contains ...    28   3.5  
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote...    27   4.7  
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro...    27   6.2  
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik...    27   6.2  
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea...    27   8.2  
At1g19030.1 68414.m02369 hypothetical protein                          27   8.2  

>At3g07430.1 68416.m00886 YGGT family protein contains Pfam profile
           PF02325: YGGT family (unknown function)
          Length = 232

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 454 VHSQKLSIAFQXSSPPSIDATTPGSDNSGPIFATRIR 344
           V +QKLS+A Q SSP   D        +GP+F   +R
Sbjct: 100 VLAQKLSLAIQTSSPVIADGLRFSLSTAGPVFFASLR 136


>At5g41505.1 68418.m05040 hypothetical protein
          Length = 245

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
 Frame = +3

Query: 159 WVNRGRERLTFRLVQVLTGHGCFGKYLHRIGAEPTTRCHHCGH*LDTAEHTLAVCP---- 326
           W +    R TF    V+      G+ +        T C  C H L+T EH    CP    
Sbjct: 84  WFSGATPRYTFISWLVMKNRVATGERMVNWKLNVDTSCVFCKHPLETREHLFFQCPFSKE 143

Query: 327 AWE-VQRRILVAK 362
            WE + R IL+ K
Sbjct: 144 VWEKLVRGILLHK 156


>At2g25970.1 68415.m03117 KH domain-containing protein 
          Length = 632

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = -2

Query: 351 GYGAAPPKRGRQRAYAPPCPASVHNGGTSSLAQLLSGAGTSRSIRAQSAPAPDG 190
           GYG AP   G    Y  P     ++   S+ A    G GT  S   QSA  P G
Sbjct: 574 GYGQAPQGYGSYGGYTQPAAGGGYSSDGSAGATAGGGGGTPAS---QSAAPPAG 624


>At5g56890.1 68418.m07099 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 1113

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 429 PSXTRHRQASTPRRQAATIPVLSLRPGYGAAPPKRGRQRAYAPPCPASVH 280
           P  + H Q    R++ A  P  S  P +  +P K  R+ +  PP P S H
Sbjct: 341 PPLSSHHQHHQERKKIADSPAPSPLPPHLISPKKSNRKGSMTPP-PQSHH 389


>At2g40040.1 68415.m04920 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to DCL
           protein, chloroplast precursor (Defective chloroplasts
           and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
           esculentum]
          Length = 839

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 164 ESWPRTPHLPSGAGADWARMLREVPAPDRS*ANDEVPPLWT 286
           + +P +    +G GADW       P P RS   D + P++T
Sbjct: 548 KKFPSSGGWSNGGGADWKGNRNHTPRPPRS--EDNLAPMFT 586


>At4g15200.1 68417.m02329 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 600

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -2

Query: 414 HRQASTPRRQAATIPVLSLRPGYGAAPPKRGRQRAYAPPCP 292
           H  ++     AA +P L L PG  A PP         PP P
Sbjct: 240 HEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPP 280


>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
           transposon protein GB:AAB95292 GI:2088658 from
           [Arabidopsis thaliana]
          Length = 1148

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 20/78 (25%), Positives = 30/78 (38%)
 Frame = -2

Query: 429 PSXTRHRQASTPRRQAATIPVLSLRPGYGAAPPKRGRQRAYAPPCPASVHNGGTSSLAQL 250
           PS  RH   ++ RR    +  +S  PG  + P  R        P    +  G T+  +  
Sbjct: 170 PSSARHPSPASGRRSGTPVRRISPTPGKPSGPVSRS-----PTPTSRRMSTGSTTMASPA 224

Query: 249 LSGAGTSRSIRAQSAPAP 196
           + G     S R  S P+P
Sbjct: 225 VRGTSPVSSSRGNS-PSP 241



 Score = 26.6 bits (56), Expect = 8.2
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
 Frame = -2

Query: 378 TIPVLSLRPGYGAAPPKRGRQRAYAPPCPASVHNGGTSSLAQLLSGAGTSRSIRAQSAPA 199
           T P   L P     PP     R   P    S+    T   ++  S  G++   R  ++P 
Sbjct: 101 TPPDTPLFPSLDDQPPAASVVRRGRPQSQISLSRSSTMEKSRR-SSKGSASPNRLSTSPR 159

Query: 198 PD------GR*GVLGHDSPSHQSLGKPPRRSVDPT*GWPT 97
            D      GR     H SP+       P R + PT G P+
Sbjct: 160 ADNMQQIRGRPSSARHPSPASGRRSGTPVRRISPTPGKPS 199


>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
           family protein similar to PAK/PLC-interacting protein 1
           (GI:4211689)  {Homo sapiens}
          Length = 1115

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 72  YKFESWSRRLANLTWGLRTVEA-VYPDFDDWVNRGRERLTFRLVQV 206
           ++F S    L+NL WG+ ++EA ++P+  +     R R + R++Q+
Sbjct: 61  FEFSSEHSALSNLYWGIDSIEASIHPECSE-EKTSRLRNSERMLQM 105


>At1g19030.1 68414.m02369 hypothetical protein
          Length = 398

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = +3

Query: 111 TW-GLRTVEAVYPDFDD-WVNRGRERLTFRLVQVLTGHGCFGKYLHRIGAEPTTRCHHCG 284
           TW  +RT + +  +++  W      + +     V       G  L +   + T  C  C 
Sbjct: 272 TWLQIRTAKLLMENYNGIWFKHSTPKYSLITWLVQKNRVATGDKLIKWNPQVTPNCILCQ 331

Query: 285 H*LDTAEHTLAVCP 326
           H L+T +H   +CP
Sbjct: 332 HTLETWDHLFFMCP 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,157,748
Number of Sequences: 28952
Number of extensions: 250295
Number of successful extensions: 787
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)