Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30543
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)             30   1.4  
SB_1137| Best HMM Match : CC (HMM E-Value=2)                           28   5.6  
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)                   28   7.4  
SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)
          Length = 327

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +1

Query: 133 VFRFVHGVPSHSFLIISKCYI*LINIQYCSVILYAYLTPNCIPRKT 270
           V  +++ VPS +   + K Y+  +  + C+ ++ +YL  NC+P KT
Sbjct: 50  VISYLNCVPSKTCTAMVKSYLNCVPSKTCTAMVISYL--NCVPSKT 93



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +1

Query: 133 VFRFVHGVPSHSFLIISKCYI*LINIQYCSVILYAYLTPNCIPRKT 270
           V  +++ VPS +   + K Y+  +  + C+ ++ +YL  NC+P KT
Sbjct: 242 VISYLNCVPSKTCTAMVKSYLNCVPSKTCTAMVISYL--NCVPSKT 285



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 142 FVHGVPSHSFLIISKCYI*LINIQYCSVILYAYLTPNCIPRKT 270
           +++ VPS +   + K Y+  +  + C+ ++ +YL  NC+P KT
Sbjct: 5   YLNCVPSKTCTAMVKSYLNCVPFKTCTAMVISYL--NCVPSKT 45


>SB_1137| Best HMM Match : CC (HMM E-Value=2)
          Length = 410

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 171 ERMRRYPVYKTKHLEHYPTYSKH 103
           E  R Y  YK KH +HY T+++H
Sbjct: 309 ELARLYHEYKAKHGKHYRTHAEH 331


>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
          Length = 236

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 159 RYPVYKTKHLEHYPTYSKHATC 94
           RY  + T+H  H   Y+ HATC
Sbjct: 149 RYMSHATRHTLHVTRYTSHATC 170



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 159 RYPVYKTKHLEHYPTYSKHATCIYLDYS 76
           RY  + T+H  H   Y  HATC  L  S
Sbjct: 209 RYTSHATRHTLHVTRYMSHATCHTLHVS 236


>SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 183 TYY*ERMRRYPVYKTKHLEHYPTYSKHATC 94
           T+Y   + RY  + T++  H   Y+ H TC
Sbjct: 33  THYTRHVTRYTGHVTRYTRHAIRYTNHVTC 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,958,520
Number of Sequences: 59808
Number of extensions: 342209
Number of successful extensions: 564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)