Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30543
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29310.1 68417.m04190 expressed protein                             29   2.6  
At2g37560.2 68415.m04607 origin recognition complex subunit 2 (O...    27   7.9  
At2g37560.1 68415.m04606 origin recognition complex subunit 2 (O...    27   7.9  
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila...    27   7.9  

>At4g29310.1 68417.m04190 expressed protein
          Length = 424

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 377 VNYKIRDSNKDPLTNCSLSTDRNVPSK 297
           V Y+I+D+ K P+ +C  S+DRN  S+
Sbjct: 175 VVYQIQDNLKQPVFSCKFSSDRNGRSR 201


>At2g37560.2 68415.m04607 origin recognition complex subunit 2
           (ORC2) identical to origin recognition complex subunit 2
           (ORC2) SP:Q38899 from [Arabidopsis thaliana]
          Length = 345

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/44 (20%), Positives = 20/44 (45%)
 Frame = -3

Query: 506 FQENSNNATSNCFLCIIIKNLAPLXKRDPQKLDFIVNS*NALHV 375
           F     +   +CF+C+++ N+     RDP+    +    +  H+
Sbjct: 147 FLHGPQSGDKDCFICVVVHNIDGPALRDPESQQTLARLSSCSHI 190


>At2g37560.1 68415.m04606 origin recognition complex subunit 2
           (ORC2) identical to origin recognition complex subunit 2
           (ORC2) SP:Q38899 from [Arabidopsis thaliana]
          Length = 363

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/44 (20%), Positives = 20/44 (45%)
 Frame = -3

Query: 506 FQENSNNATSNCFLCIIIKNLAPLXKRDPQKLDFIVNS*NALHV 375
           F     +   +CF+C+++ N+     RDP+    +    +  H+
Sbjct: 165 FLHGPQSGDKDCFICVVVHNIDGPALRDPESQQTLARLSSCSHI 208


>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicase GB:6321111 from (S.
           cerevisiae)
          Length = 558

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 438 AXQKGSTKTGFYCKFLKC 385
           A  K  T +G YC++LKC
Sbjct: 230 AESKSKTSSGLYCEYLKC 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,206,070
Number of Sequences: 28952
Number of extensions: 229047
Number of successful extensions: 396
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)