Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30538
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        126   7e-30
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)                     29   1.6  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         28   3.6  
SB_57164| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_11460| Best HMM Match : Pkinase (HMM E-Value=0)                     27   8.3  
SB_5121| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  126 bits (305), Expect = 7e-30
 Identities = 61/91 (67%), Positives = 72/91 (79%)
 Frame = +1

Query: 100 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVC 279
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TVC
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTVC 64

Query: 280 IVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 372
           IVLSDD   D+KIRM             DVV
Sbjct: 65  IVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
          Length = 672

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 154 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDN 300
           +EE + D   +V+ S      LQL R  T +LK    K ++ +++ D++
Sbjct: 141 IEERIEDSCFLVSTSTTNSTTLQLLRNMTGILKSDSDKVSIGVLVDDES 189


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 435  IINWQYVHSFS-IFH*RTRSYGYHIRKTHT 349
            II W Y  S+  IFH  TR +G H+  T T
Sbjct: 2525 IIAWVYPESWGPIFHYNTRGWGVHLWLTRT 2554


>SB_57164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 178 NSVVALSQAKMEQLQLFRGD-TVLLKGKRRKETVCIVLSDDNCPDEKIR 321
           N  + L+ A+ E++ L R D T    G+R ++T C+   +D    EKIR
Sbjct: 129 NEKLPLTHAQNEEVALTRVDRTDDDPGRREEDTQCLQGLEDKMSKEKIR 177


>SB_11460| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 323

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 339 SHDTVHPNFLIRAIII*EHDANGFLAAFAFEQDCVTT 229
           S D VH +     +++ + D N  ++ F F +DC+TT
Sbjct: 168 SQDIVHRDLKCENLLL-DKDLNIIISDFGFARDCLTT 203


>SB_5121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 178 NSVVALSQAKMEQLQLFRGD-TVLLKGKRRKETVCIVLSDDNCPDEKIR 321
           N  + L+ A+ E++ L R D T    G+R ++T C+   +D    EKIR
Sbjct: 129 NEKLPLTHAQNEEVALTRVDRTDDDPGRREEDTQCLQGLEDKMSKEKIR 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,229
Number of Sequences: 59808
Number of extensions: 298819
Number of successful extensions: 766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)