Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30538
(488 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 187 4e-48
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 184 3e-47
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 169 9e-43
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 0.55
At1g30750.1 68414.m03758 expressed protein 29 1.7
At5g10520.1 68418.m01218 protein kinase family protein contains ... 28 2.9
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 27 6.8
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 27 6.8
At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family pr... 27 6.8
At5g18660.1 68418.m02215 isoflavone reductase-related low simila... 27 9.0
At1g62730.1 68414.m07080 expressed protein 27 9.0
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 187 bits (455), Expect = 4e-48
Identities = 84/135 (62%), Positives = 105/135 (77%)
Frame = +1
Query: 82 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 261
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67
Query: 262 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 441
RK+TVCI L+D+ C + KIRM DV+S+ CP VKYGKRVHILP+DD+V
Sbjct: 68 RKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTV 127
Query: 442 EGLTGNLFEVYLKPY 486
EG+TGNLF+ YLKPY
Sbjct: 128 EGVTGNLFDAYLKPY 142
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 184 bits (448), Expect = 3e-47
Identities = 82/135 (60%), Positives = 104/135 (77%)
Frame = +1
Query: 82 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 261
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67
Query: 262 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 441
RK+TVCI L+D+ C + KIRM DV+S+ CP VKYGKRVHILP+DD+V
Sbjct: 68 RKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTV 127
Query: 442 EGLTGNLFEVYLKPY 486
EG+TGNLF+ YLKPY
Sbjct: 128 EGVTGNLFDAYLKPY 142
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 169 bits (411), Expect = 9e-43
Identities = 76/136 (55%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Frame = +1
Query: 82 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 258
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67
Query: 259 RRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDS 438
+RK+TVCI L+D+ C + KIRM DV+S+ CP VKYG RVHILP+DD+
Sbjct: 68 KRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHILPLDDT 127
Query: 439 VEGLTGNLFEVYLKPY 486
+EG++GN+F+ YLKPY
Sbjct: 128 IEGVSGNIFDAYLKPY 143
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 0.55
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -3
Query: 234 TTEELKLLHFGL*KCHD*VVIAD 166
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At1g30750.1 68414.m03758 expressed protein
Length = 212
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +2
Query: 119 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKANAARKPFAS 283
SS +P + S++ F++P + FN + + S S ++A +PF +
Sbjct: 115 SSTGLNNPILGQPSTSSSLNQPLTGFNQPSSTGFNQPISSSSSSSSSAQNQPFTN 169
>At5g10520.1 68418.m01218 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 467
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 77 KWQIIKVLMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 220
++ +I +L Y R ++ R P L+ +SA T +++ +P W NF
Sbjct: 95 RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 390 RTRSYGYHIRKTHTKVVSHDTVHPNFLIRAII 295
RT S +++ HTK++ H+ + L+R +I
Sbjct: 28 RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 56 SNNKF*IKWQIIKVLMIYRPRSSVARTDPTVSLSKKQSAMTTQS 187
S NK I +IIK IY P+++ A + S S SA TT S
Sbjct: 64 SKNKHWIVAEIIKKARIYSPKAAAAAVSASASAS---SASTTDS 104
>At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 421
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 366 IRKTHTKVVSHDTVHPNFLIRAIII*EHDANGF 268
++K K+ H+T +FLIR ++ EH +GF
Sbjct: 355 VKKNEVKIEVHETGERDFLIR--VVQEHKQDGF 385
>At5g18660.1 68418.m02215 isoflavone reductase-related low
similarity to SP|P52575 Isoflavone reductase (EC
1.3.1.-) (IFR) {Medicago sativa}
Length = 417
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 88 NKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAK 207
NKSP D++ ++ R +V+E + +V+A+++ K
Sbjct: 78 NKSPKDINVLVVGSTGYIGRFVVKEMIKRGFNVIAVAREK 117
>At1g62730.1 68414.m07080 expressed protein
Length = 304
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 394 VKYGKRVHILPIDDSVEGLTGNLFEV 471
VK G R+ IL +DS EGL+ +FE+
Sbjct: 203 VKQGGRLEILLDNDSREGLSNVVFEI 228
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,446,599
Number of Sequences: 28952
Number of extensions: 201547
Number of successful extensions: 536
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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