Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30531
         (572 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta...   124   3e-29
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta...    69   2e-12
At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta...    67   7e-12
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati...    38   0.004
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta...    34   0.077
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta...    33   0.14 
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati...    30   1.3  
At1g35850.1 68414.m04454 pumilio/Puf RNA-binding domain-containi...    30   1.3  

>At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F,
           putative / snRNP-F, putative / Sm protein F, putative
           similar to SWISS-PROT:Q15356 small nuclear
           ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF)
           [Mouse]
          Length = 88

 Score =  124 bits (300), Expect = 3e-29
 Identities = 54/70 (77%), Positives = 60/70 (85%)
 Frame = +2

Query: 92  INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 271
           +NPKPFLN+LTGK+V+VKLKWG EYKG L S D YMNLQL NTEE +DG  TGNLGE+LI
Sbjct: 6   VNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILI 65

Query: 272 RCNNVLYXRG 301
           RCNNVLY RG
Sbjct: 66  RCNNVLYVRG 75


>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
           putative / U6 snRNA-associated Sm-like protein, putative
           / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
           snRNA-associated Sm-like protein LSm6 [Mus musculus]
          Length = 91

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 31/65 (47%), Positives = 41/65 (63%)
 Frame = +2

Query: 98  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 277
           P  FL S+ GK V+VKL  G +Y+G+L   DGYMN+ +  TEE V+G      G+  +R 
Sbjct: 15  PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 278 NNVLY 292
           NNVLY
Sbjct: 75  NNVLY 79


>At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F,
           putative / U6 snRNA-associated Sm-like protein, putative
           / Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
           snRNA-associated Sm-like protein LSm6 [Mus musculus]
          Length = 91

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 31/65 (47%), Positives = 40/65 (61%)
 Frame = +2

Query: 98  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 277
           P  FL S+ G+ V+VKL  G +Y+G L   DGYMN+ +  TEE V+G      G+  IR 
Sbjct: 15  PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74

Query: 278 NNVLY 292
           NNVLY
Sbjct: 75  NNVLY 79


>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to
           SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
           LSm4 [Mus musculus]
          Length = 129

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 98  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 274
           P   L +  G  +LV+LK G  Y G LV+ D +MN+ L        DG     + E  IR
Sbjct: 3   PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62

Query: 275 CNNVLYXRGAD 307
            N + Y R  D
Sbjct: 63  GNTIKYLRVPD 73


>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
           putative / snRNP-G, putative / Sm protein G, putative
           similar to small nuclear ribonucleoprotein G (snRNP-G,
           Sm protein G, Sm-G, SmG) [Homo sapiens]
           SWISS-PROT:Q15357
          Length = 80

 Score = 33.9 bits (74), Expect = 0.077
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = +2

Query: 104 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 283
           P L     K + +KL       G L   D +MNL + NT E V+G    ++G V+IR N+
Sbjct: 8   PDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRGNS 66

Query: 284 VL 289
           ++
Sbjct: 67  IV 68


>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
           putative / snRNP-G, putative / Sm protein G, putative
           similar to SWISS-PROT:Q15357 small nuclear
           ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
           [Homo sapiens]
          Length = 79

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = +2

Query: 104 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 283
           P L     K + +KL       G L   D +MNL + NT E V+G    ++G V+IR N+
Sbjct: 8   PDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE-VNGDDKTDIGMVVIRGNS 66

Query: 284 VL 289
           ++
Sbjct: 67  IV 68


>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to U6
           snRNA-associated Sm-like protein LSm5 [Homo sapiens]
           SWISS-PROT:Q9Y4Y9
          Length = 88

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +2

Query: 98  PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE---LVDGTCTGNLGEVL 268
           P   ++   G  + V +K   E  G+L   D Y+N+ L +  E     +G     L ++L
Sbjct: 10  PSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQIL 69

Query: 269 IRCNNV 286
           +  NN+
Sbjct: 70  LNGNNI 75


>At1g35850.1 68414.m04454 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806: Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain)
          Length = 304

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 173 LLVSTDGYMNLQLANTEELVDGTCTGNLGEVL 268
           LL+S D Y N  + +  +L D  CTGN+ + L
Sbjct: 168 LLLSNDAYGNFVVQHVLKLHDSRCTGNIADKL 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,785,860
Number of Sequences: 28952
Number of extensions: 140168
Number of successful extensions: 299
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)