Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30521
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     32   0.30 
SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_16859| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)                      29   2.8  
SB_43805| Best HMM Match : YscO (HMM E-Value=6)                        29   2.8  
SB_57623| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-30)                 28   3.7  
SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)                28   4.9  
SB_9234| Best HMM Match : Topoisom_I_N (HMM E-Value=0)                 28   4.9  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  27   8.6  
SB_49327| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   8.6  
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)                       27   8.6  

>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 18/93 (19%), Positives = 44/93 (47%)
 Frame = +1

Query: 52  RPKVIQQLLAAEKRAAEKVSEARQAKSETPKAGQGGGSSMKLKSTDRSVKGSSKNLKPST 231
           R K+       +K A + +++     + T K      +  +LK  ++ ++ ++K ++   
Sbjct: 213 REKINDLEKTQDKLAKDNLAQKASVSTLTAKLETATNNLERLKKLEKELQDTNKKMRLEK 272

Query: 232 WVPG*GVAAKIDAETKVKIEEMNKMVQTQKEAV 330
                    K D ++K KI++ NK++QT ++ +
Sbjct: 273 DKEVKEAKEKADTKSKQKIDDNNKLIQTLQKRI 305


>SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 253 AAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 393
           AAK +   +++IE +NK ++  KE +  D   + Y ++ E + N+ L
Sbjct: 7   AAKREELKEMRIEMVNKAIEESKEFITPDDEKIAYALENETNYNFAL 53


>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -3

Query: 272  SASILAATPYPGTHVLGFKFFELPFTLLSVLFNFILEPPPWPALGVSLF 126
            S S  + TPY   H+ G        T++S      L PPP PA   SLF
Sbjct: 1530 SLSGTSQTPYDRNHLTGASSSSSACTVISAYPREPLNPPPSPATERSLF 1578


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 67  QQLLAAEKRAAEKVSEARQAKSETPKAGQGGGSSMKLKSTDRSVKGSSKNLKPS 228
           QQ+  AEK   EK+S+ R  +      G+GGG +      +    G++ N +P+
Sbjct: 381 QQIQQAEKMINEKISDQRGGQGR----GRGGGGNFNQNWNNNQQNGNNWNQQPN 430


>SB_16859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
 Frame = +1

Query: 103 KVSEARQAKSETPKAGQGGGSSMKLKS-------TDRSVKGSSKNLK--PSTWVPG*GVA 255
           K+ ++++ K+ TPK     GSS  +K+       T R+  GSS  LK  P   VP  G+ 
Sbjct: 55  KLDKSKRGKTRTPKKSSLAGSSSSIKNFINGGSKTSRTFNGSSLELKHCPKCQVPQAGLV 114

Query: 256 AK 261
            +
Sbjct: 115 TQ 116


>SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)
          Length = 315

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +1

Query: 253 AAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 393
           AAK + E K ++IE +NK ++  KE +  D L+  + Y ++ E + N+ L
Sbjct: 144 AAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193


>SB_43805| Best HMM Match : YscO (HMM E-Value=6)
          Length = 243

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +1

Query: 253 AAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 393
           AAK + E K ++IE +NK ++  KE +  D L+  + Y ++ E + N+ L
Sbjct: 144 AAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193


>SB_57623| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-30)
          Length = 337

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 251 TPYPGTHVLGFKFFELPFTLL 189
           TP P    +GF FF LPF+L+
Sbjct: 178 TPIPTAFAIGFLFFLLPFSLM 198


>SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)
          Length = 732

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +1

Query: 193 SVKGSSKNLKPSTWVPG*GVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIK 366
           S K S +    + W P    A  ID ETK  ++++       ++A   D+L+ +Y  K
Sbjct: 327 SPKASLEERLSNGWSPSRSRALSIDLETKEYVKQLEDATDINEQA---DILHFLYSTK 381


>SB_9234| Best HMM Match : Topoisom_I_N (HMM E-Value=0)
          Length = 335

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 160 GSSMKLKSTDRSVKGSSKN-LKPSTWVPG*GVAAKIDAETKVKIEEMNKMVQTQKEAVIK 336
           GS +K+KS  +    S K   KP T      +  K+ A+  +K ++  K ++T+K+ V+K
Sbjct: 18  GSDLKVKSEPKDKDPSQKKPQKPKT------LNDKVTAQKAIKKDKDGKAIKTEKKPVVK 71


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 256  AKIDAETKVKIEEMNKMVQTQKEAVIKD 339
            AK+D E K K   +NKM   ++E +I D
Sbjct: 2455 AKLDGEFKGKYYPLNKMTDEEQEQLIND 2482


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = +1

Query: 259  KIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKP 369
            K DA T  ++E+++K+++ + E +IK+     YD+KP
Sbjct: 1742 KHDATT-AELEKIDKLLRGKIEQLIKEHTKKKYDVKP 1777


>SB_49327| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1196

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 154 GGGSSMKLKSTDRSVKGSSKNLKPSTWV 237
           GGG S  L++TD  ++  SK LK  +W+
Sbjct: 634 GGGYSFNLQNTDEGLRELSK-LKEGSWI 660


>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
          Length = 259

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 92  ALRRKSARQGKRKAKRLKQAKEEAQ 166
           AL+RK ++QGK+  K+LK   ++ Q
Sbjct: 213 ALKRKVSKQGKKFNKKLKGVSQQVQ 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,135,775
Number of Sequences: 59808
Number of extensions: 227725
Number of successful extensions: 661
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)