Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30521
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23710.1 68417.m03412 vacuolar ATP synthase subunit G 2 (VATG... 39 0.002
At3g01390.2 68416.m00062 vacuolar ATP synthase subunit G 1 (VATG... 34 0.061
At3g01390.1 68416.m00061 vacuolar ATP synthase subunit G 1 (VATG... 34 0.061
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put... 29 1.7
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f... 28 4.0
At2g37470.1 68415.m04596 histone H2B, putative strong similarity... 27 5.3
At3g48180.1 68416.m05255 expressed protein 27 7.0
At1g47240.1 68414.m05230 NRAMP metal ion transporter 2, putative... 27 7.0
At1g44810.1 68414.m05133 expressed protein contains Pfam profil... 27 7.0
At5g07630.1 68418.m00874 nuclear division RFT family protein low... 27 9.3
>At4g23710.1 68417.m03412 vacuolar ATP synthase subunit G 2 (VATG2)
/ V-ATPase G subunit 2 (VAG2) / vacuolar proton pump G
subunit 2 identical to Swiss-Prot:O82629 vacuolar ATP
synthase subunit G 2 (V-ATPase G subunit 2, Vacuolar
proton pump G subunit 2) [Arabidopsis thaliana]
Length = 106
Score = 38.7 bits (86), Expect = 0.002
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +1
Query: 64 IQQLLAAEKRAAEKVSEARQAKSETPKAGQGGGSSMKLKSTDRSVKGSSKNLKPSTWVPG 243
IQQLLAAE+ A + V+ AR AK K + + + + +G + L+ ++ G
Sbjct: 6 IQQLLAAEREAQQIVNAARTAKMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATSGDSG 65
Query: 244 *GVAAKIDAETKVKIEEM-NKMVQTQKEAV 330
V +++ ET KIE++ N+ + K+ V
Sbjct: 66 ANV-KRLEQETDAKIEQLKNEATRISKDVV 94
>At3g01390.2 68416.m00062 vacuolar ATP synthase subunit G 1 (VATG1)
/ V-ATPase G subunit 1 (VAG1) / vacuolar proton pump G
subunit 1 (VMA10) identical to SWISS-PROT:O82628
vacuolar ATP synthase subunit G 1 (V-ATPase G subunit 1,
Vacuolar proton pump G subunit 1) [Arabidopsis thaliana]
Length = 110
Score = 33.9 bits (74), Expect = 0.061
Identities = 27/101 (26%), Positives = 47/101 (46%)
Frame = +1
Query: 64 IQQLLAAEKRAAEKVSEARQAKSETPKAGQGGGSSMKLKSTDRSVKGSSKNLKPSTWVPG 243
IQQLLAAE A V+ AR AK K + + ++ + + L+ ++ G
Sbjct: 10 IQQLLAAEVEAQHIVNAARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRKLEETSGDSG 69
Query: 244 *GVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIK 366
V +++ ET KIE++ + V++ +L V +K
Sbjct: 70 ANV-KRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVK 109
>At3g01390.1 68416.m00061 vacuolar ATP synthase subunit G 1 (VATG1)
/ V-ATPase G subunit 1 (VAG1) / vacuolar proton pump G
subunit 1 (VMA10) identical to SWISS-PROT:O82628
vacuolar ATP synthase subunit G 1 (V-ATPase G subunit 1,
Vacuolar proton pump G subunit 1) [Arabidopsis thaliana]
Length = 110
Score = 33.9 bits (74), Expect = 0.061
Identities = 27/101 (26%), Positives = 47/101 (46%)
Frame = +1
Query: 64 IQQLLAAEKRAAEKVSEARQAKSETPKAGQGGGSSMKLKSTDRSVKGSSKNLKPSTWVPG 243
IQQLLAAE A V+ AR AK K + + ++ + + L+ ++ G
Sbjct: 10 IQQLLAAEVEAQHIVNAARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRKLEETSGDSG 69
Query: 244 *GVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIK 366
V +++ ET KIE++ + V++ +L V +K
Sbjct: 70 ANV-KRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVK 109
>At4g02510.1 68417.m00343 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1503
Score = 29.1 bits (62), Expect = 1.7
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +1
Query: 148 GQGGGSSMKLKSTDRSVKGSSKNLKPSTWVPG*GVAAKIDAETKVKIEEMNKMVQTQKEA 327
GQG G ++L+S + +G K + + V +DA+ V E +V KEA
Sbjct: 437 GQGEGGEVELESDKATEEGGGKLVSEGDSMVDSSVVDSVDADINV-AEPGVVVVGAAKEA 495
Query: 328 VIKD 339
VIK+
Sbjct: 496 VIKE 499
>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
factor (HB-14) identical to homeodomain transcription
factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
thaliana];
Length = 852
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +1
Query: 253 AAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYD---IKPELH 378
AA++ + K+ MNK++ + + + K V NLVY+ +K +LH
Sbjct: 87 AARLQTVNR-KLNAMNKLLMEENDRLQKQVSNLVYENGHMKHQLH 130
>At2g37470.1 68415.m04596 histone H2B, putative strong similarity to
histone H2B from Lycopersicon esculentum GI:3021483,
GI:3021485, Capsicum annuum SP|O49118; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 138
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +1
Query: 79 AAEKRAAEKVSEARQAKSETPKAGQ-----GGGSSMKLKSTDRSVK 201
AAEK+ AEK + + PKA + GGS K K + +SV+
Sbjct: 5 AAEKKPAEKKPAGKAPAEKLPKAEKKISKDAGGSEKKKKKSKKSVE 50
>At3g48180.1 68416.m05255 expressed protein
Length = 77
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 97 AEKVSEARQAKSETPKAGQGGGSSMKLKSTDRSVKGSSK 213
AE+ +Q+ +T G+GGG+S K K + G +K
Sbjct: 7 AEQWDSNQQSSGKTTHGGEGGGASSKYKEKVGAGLGKTK 45
>At1g47240.1 68414.m05230 NRAMP metal ion transporter 2, putative
(NRAMP2) similar to metal transporter Nramp3
[Arabidopsis thaliana] gi|6468012|gb|AAF13278; member of
the natural resistance-associated macrophage protein
(NRAMP) metal transporter family, PMID:11500563
Length = 530
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 335 LMTASFCVWTILFISSILTLVSASILAATPYPGTHV 228
L + CVWT +I+ I+ L+S S +P+ + +
Sbjct: 484 LFGVTVCVWTTAYIAFIVYLISHSNFFPSPWSSSSI 519
>At1g44810.1 68414.m05133 expressed protein contains Pfam profile:
PF04504 protein of unknown function, DUF573
Length = 296
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = +1
Query: 256 AKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDI 363
+K+ ETK +IEE KMV+ ++ ++ ++++ ++
Sbjct: 253 SKVSKETKKRIEEKMKMVEAKELELLSQKIDVLKEV 288
>At5g07630.1 68418.m00874 nuclear division RFT family protein low
similarity to SP|P38206 Nuclear division RFT1 protein
{Saccharomyces cerevisiae}; contains Pfam profile
PF04506: Rft protein
Length = 401
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -3
Query: 335 LMTASFCVWTILFISSILTLVS-ASILAATPYPGTHVLGFKFFELPFTLLSVL 180
L+ A+ W IL +SSI+TL+S +IL + T L F + F L +++
Sbjct: 327 LIMANSLSWQILILSSIITLISEKTILDRKNFWETFPLHFGIGVICFCLSAIV 379
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,368,573
Number of Sequences: 28952
Number of extensions: 168963
Number of successful extensions: 538
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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