Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30515
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4)                    29   2.8  
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)                   28   6.5  
SB_4406| Best HMM Match : NGF (HMM E-Value=6.8)                        28   8.6  

>SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = -2

Query: 232 QFRLRIHCLRGFINLDSRKKSIWHIFLISNLMV 134
           ++R+ +HC +  +N+DS KK ++ I+LI+ + +
Sbjct: 144 RYRMLVHCGKKQLNVDSAKKLVFVIWLIAFVFI 176


>SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4)
          Length = 734

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 116 LLINKRNHQITDKKNMPDAFFSAIQID-KTP*TMNAQTKLFLNLRDIKNILPETHYGNVV 292
           L++   N +ITD  N+P   FS++ +   +  TM      +  L    N+   TH G V+
Sbjct: 173 LILQHNNFEITDSTNLPITSFSSMMLRILSETTMEFFPLCYSALSKCGNLFDPTHVGQVI 232


>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
          Length = 896

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 61  LVESKHK*LTNFTNASYLFVNQ*KKPSDY 147
           L E KHK + NF + ++L  N  + P+DY
Sbjct: 256 LEERKHKGIFNFQDGAFLVRNSTRHPNDY 284


>SB_4406| Best HMM Match : NGF (HMM E-Value=6.8)
          Length = 405

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 291 LTSKSVSLITIEQTYILPLNFHYLEHLLESASNLNAKI 404
           +T  S   IT++Q  IL  +  YLE  +E     NAK+
Sbjct: 1   MTGDSTKDITVDQDMILEGHQSYLEDAIEQRDRYNAKL 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,383,565
Number of Sequences: 59808
Number of extensions: 364690
Number of successful extensions: 565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)