Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30515
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    31   0.61 
U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidan...    28   7.6  
U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidan...    28   7.6  
AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.      28   7.6  

>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 466  YCGWHLCCFKSIAHI 510
            YCGW  CC K I+HI
Sbjct: 2987 YCGWLKCCIKDISHI 3001


>U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform a protein.
          Length = 671

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 221 QTKLFLNLRD-IKNILP-ETHYGNVVDLKISFAYNDRTNLHFTVEFSLSRTFIGIS 382
           Q KL + + D I+ I+  +T+Y NV  +K    +N+  +     E S+SRT + ++
Sbjct: 511 QLKLLMQIMDKIQPIIKKDTNYSNVDRIKKEAVWNEDESRWILPEMSMSRTILPLA 566


>U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform b protein.
          Length = 699

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 221 QTKLFLNLRD-IKNILP-ETHYGNVVDLKISFAYNDRTNLHFTVEFSLSRTFIGIS 382
           Q KL + + D I+ I+  +T+Y NV  +K    +N+  +     E S+SRT + ++
Sbjct: 539 QLKLLMQIMDKIQPIIKKDTNYSNVDRIKKEAVWNEDESRWILPEMSMSRTILPLA 594


>AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 221 QTKLFLNLRD-IKNILP-ETHYGNVVDLKISFAYNDRTNLHFTVEFSLSRTFIGIS 382
           Q KL + + D I+ I+  +T+Y NV  +K    +N+  +     E S+SRT + ++
Sbjct: 511 QLKLLMQIMDKIQPIIKKDTNYSNVDRIKKEAVWNEDESRWILPEMSMSRTILPLA 566


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,888
Number of Sequences: 27780
Number of extensions: 301831
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)