Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30514
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.0  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   7.9  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   7.9  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 595 SH*TFKTFSCKICTF 551
           SH   KTF CK C F
Sbjct: 195 SHGKIKTFKCKQCDF 209


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 636 LKLNVAKMISIQKYHIKPLKHSPVKFVR 553
           LK  ++ + SIQ Y IKP + +   +VR
Sbjct: 135 LKTLLSNLESIQIYSIKPKERNSNHWVR 162


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 636 LKLNVAKMISIQKYHIKPLKHSPVKFVR 553
           LK  ++ + SIQ Y IKP + +   +VR
Sbjct: 91  LKTLLSNLESIQIYSIKPKERNSNHWVR 118


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,941
Number of Sequences: 336
Number of extensions: 2376
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)