Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30510
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   2e-35
SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)            31   0.75 
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)                   29   4.0  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_18834| Best HMM Match : FlgM (HMM E-Value=4.7)                      28   7.0  

>SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score =  146 bits (353), Expect = 2e-35
 Identities = 71/105 (67%), Positives = 85/105 (80%)
 Frame = +3

Query: 336 KKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFV 515
           +KDNVAGV LPIFE   DG+++YEL GL+RGGQQL+K ++ +  AVKLLVELASLQTSFV
Sbjct: 2   RKDNVAGVLLPIFEPVSDGTNSYELTGLSRGGQQLSKCQEVYGKAVKLLVELASLQTSFV 61

Query: 516 TLDEVIKITNRRVNAIEHVIIPRLERTLAYIISRAGRA*A*EFYR 650
           TLDE IK+TNRRVNAIEHVIIPR+E T++YI+         EFYR
Sbjct: 62  TLDEAIKLTNRRVNAIEHVIIPRIENTVSYILGELDEREREEFYR 106


>SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)
          Length = 228

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 42  IKMSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRM---ILSKIIETK 212
           I+MSG+        RG  +LI     G   G GLLK  AD L   F +   ++  ++  +
Sbjct: 105 IQMSGRAGRRGLDERGIVILIIDEKMGPDVGKGLLKGHADPLNSAFHLTYNMVLNLLRVE 164

Query: 213 TLMGEVMKEAAF 248
            +  E+M E +F
Sbjct: 165 EINPEIMLEKSF 176


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 429 HHGPNQPTHRYQNHPGMTQRLGG*HQQH 346
           +H   Q THRY  HP +T R    HQQH
Sbjct: 232 YHQHPQVTHRYHQHPQVTHRY---HQQH 256


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 607  MYASVRSSRGMITCSMALTRLFVILITSSRVTNEVCSDANSTKSFTALWK-FFLSFASCC 431
            +Y SVR    +  CS A T LF     S RV + VCS     + FT L+  F LS   C 
Sbjct: 947  VYLSVRVCSPV--CSRAFTSLFACFPMSVRVCSPVCS-----RVFTCLFACFHLSVRVCS 999

Query: 430  P 428
            P
Sbjct: 1000 P 1000


>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
          Length = 781

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 407 VGWFGPWWAAACKAQEEL 460
           VGWF P W  AC A+ +L
Sbjct: 341 VGWFAPPWVRACMAEYQL 358


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +3

Query: 432 QQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLA 602
           QQL+KL   + S  +L   LASLQ + + + E  K     V+ + H I    +R +A
Sbjct: 604 QQLSKLNAEYMSLCQLKTMLASLQNAGMGIIEKNKDDPTTVDELTHKIQEVTDRYVA 660


>SB_18834| Best HMM Match : FlgM (HMM E-Value=4.7)
          Length = 233

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
 Frame = +3

Query: 105 KGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDF 284
           K +L  A+  + L K K      ++++  +K    K      +  A + LA+AK+   + 
Sbjct: 43  KSKLQLAIAKYKLAKAKYKLANAKYKLAKAKYKPAKAKYK--LANAKYKLAKAKYKLANA 100

Query: 285 NQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQ 464
                  + KA+ K+   K   A         Y+     Y+LA LA    +LAK K    
Sbjct: 101 KY----KLAKAKYKVAKAKYKFANA------KYKLAKAKYKLAKLAIAKYKLAKAKYKLA 150

Query: 465 SA-VKLLVELA 494
           +A  KL+V +A
Sbjct: 151 NAKYKLVVLIA 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,924,613
Number of Sequences: 59808
Number of extensions: 415969
Number of successful extensions: 1062
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)